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Splicing modulation sensitizes chronic lymphocytic leukemia cells to venetoclax by remodeling mitochondrial apoptotic dependencies
Elisa ten Hacken, Rebecca Valentin, Fara Faye D. Regis, Jing Sun, Shanye Yin, Lillian Werner, Jing Deng, Michaela Gruber, Jessica Wong, Mei Zheng, Amy L. Gill, Michael Seiler, Peter Smith, Michael Thomas, Silvia Buonamici, Emanuela M. Ghia, Ekaterina Kim, Laura Z. Rassenti, Jan A. Burger, Thomas J. Kipps, Matthew L. Meyerson, Pavan Bachireddy, Lili Wang, Robin Reed, Donna Neuberg, Ruben D. Carrasco, Angela N. Brooks, Anthony Letai, Matthew S. Davids, Catherine J. Wu
Elisa ten Hacken, Rebecca Valentin, Fara Faye D. Regis, Jing Sun, Shanye Yin, Lillian Werner, Jing Deng, Michaela Gruber, Jessica Wong, Mei Zheng, Amy L. Gill, Michael Seiler, Peter Smith, Michael Thomas, Silvia Buonamici, Emanuela M. Ghia, Ekaterina Kim, Laura Z. Rassenti, Jan A. Burger, Thomas J. Kipps, Matthew L. Meyerson, Pavan Bachireddy, Lili Wang, Robin Reed, Donna Neuberg, Ruben D. Carrasco, Angela N. Brooks, Anthony Letai, Matthew S. Davids, Catherine J. Wu
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Research Article Hematology Therapeutics

Splicing modulation sensitizes chronic lymphocytic leukemia cells to venetoclax by remodeling mitochondrial apoptotic dependencies

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Abstract

The identification of targetable vulnerabilities in the context of therapeutic resistance is a key challenge in cancer treatment. We detected pervasive aberrant splicing as a characteristic feature of chronic lymphocytic leukemia (CLL), irrespective of splicing factor mutation status, which was associated with sensitivity to the spliceosome modulator, E7107. Splicing modulation affected CLL survival pathways, including members of the B cell lymphoma-2 (BCL2) family of proteins, remodeling antiapoptotic dependencies of human and murine CLL cells. E7107 treatment decreased myeloid cell leukemia-1 (MCL1) dependence and increased BCL2 dependence, sensitizing primary human CLL cells and venetoclax-resistant CLL-like cells from an Eμ-TCL1–based adoptive transfer murine model to treatment with the BCL2 inhibitor venetoclax. Our data provide preclinical rationale to support the combination of venetoclax with splicing modulators to reprogram apoptotic dependencies in CLL for treating venetoclax-resistant CLL cases.

Authors

Elisa ten Hacken, Rebecca Valentin, Fara Faye D. Regis, Jing Sun, Shanye Yin, Lillian Werner, Jing Deng, Michaela Gruber, Jessica Wong, Mei Zheng, Amy L. Gill, Michael Seiler, Peter Smith, Michael Thomas, Silvia Buonamici, Emanuela M. Ghia, Ekaterina Kim, Laura Z. Rassenti, Jan A. Burger, Thomas J. Kipps, Matthew L. Meyerson, Pavan Bachireddy, Lili Wang, Robin Reed, Donna Neuberg, Ruben D. Carrasco, Angela N. Brooks, Anthony Letai, Matthew S. Davids, Catherine J. Wu

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Figure 5

The Eμ-TCL1 mouse model shows high MCL1 dependence and resistance to venetoclax.

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The Eμ-TCL1 mouse model shows high MCL1 dependence and resistance to ven...
(A) Baseline BH3-profiling analysis of 7 TCL1 splenocyte preparations as compared with the previously analyzed 14 CLL samples. Graphs from left to right refer to percentage cytochrome c loss after incubation with 1 μM BAD peptide (BCL2 dependence), 1 μM MS1 (MCL1 dependence), 1 μM HRK (BCLxL dependence), and 1 μM FS1 (BFL1 dependence). Reported P values were calculated by Mann Whitney U test. (B) Viability measurement as a percentage of the untreated control of 5 TCL1 splenocyte samples and 6 CLL samples after overnight treatment with 1 nM and 5 nM E7107 on OP9 stroma. P values were calculated by Mann Whitney U test. (C) Heatmap of Δ priming values of 7 TCL1 splenocyte samples after 8-hour treatment with 5 nM E7107 as compared with DMSO-treated controls (cyan, lowest value; yellow, highest value). P values of comparisons between E7107 treatment and DMSO were calculated by Wilcoxon signed-rank test. Individual values of DMSO- or E7107-treated samples are displayed in Supplemental Figure 5B. (D) Viability measurement as a percentage of the untreated control of 6 samples after overnight treatment with 1 nM E7107, 5 nM venetoclax, or the combination of both on OP9 stroma. Reported P values were calculated by 1-way ANOVA with Scheffé’s correction for multiple comparisons. (E) Western blot analysis of MCL1, BCL2, PARP, and cleaved PARP levels of 1 representative TCL1 sample after overnight treatment with 1 nM E7107, 5 nM venetoclax, or the combination of both. β-Actin was used as loading control. Molecular weights (in kDa) are indicated in the figure. (F) Viability measurement as a percentage of the untreated control of 5 TCL1 samples after 8 hours of treatment with increasing concentrations of E7107, S63845, or the combination of both. Reported P values were calculated by 1-way ANOVA with Scheffé’s correction for multiple comparisons.

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