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Residual function of cystic fibrosis mutants predicts response to small molecule CFTR modulators
Sangwoo T. Han, Andras Rab, Matthew J. Pellicore, Emily F. Davis, Allison F. McCague, Taylor A. Evans, Anya T. Joynt, Zhongzhou Lu, Zhiwei Cai, Karen S. Raraigh, Jeong S. Hong, David N. Sheppard, Eric J. Sorscher, Garry R. Cutting
Sangwoo T. Han, Andras Rab, Matthew J. Pellicore, Emily F. Davis, Allison F. McCague, Taylor A. Evans, Anya T. Joynt, Zhongzhou Lu, Zhiwei Cai, Karen S. Raraigh, Jeong S. Hong, David N. Sheppard, Eric J. Sorscher, Garry R. Cutting
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Research Article Genetics Therapeutics

Residual function of cystic fibrosis mutants predicts response to small molecule CFTR modulators

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Abstract

Treatment of individuals with cystic fibrosis (CF) has been transformed by small molecule therapies that target select pathogenic variants in the CF transmembrane conductance regulator (CFTR). To expand treatment eligibility, we stably expressed 43 rare missense CFTR variants associated with moderate CF from a single site in the genome of human CF bronchial epithelial (CFBE41o–) cells. The magnitude of drug response was highly correlated with residual CFTR function for the potentiator ivacaftor, the corrector lumacaftor, and ivacaftor-lumacaftor combination therapy. Response of a second set of 16 variants expressed stably in Fischer rat thyroid (FRT) cells showed nearly identical correlations. Subsets of variants were identified that demonstrated statistically significantly higher responses to specific treatments. Furthermore, nearly all variants studied in CFBE cells (40 of 43) and FRT cells (13 of 16) demonstrated greater response to ivacaftor-lumacaftor combination therapy than either modulator alone. Together, these variants represent 87% of individuals in the CFTR2 database with at least 1 missense variant. Thus, our results indicate that most individuals with CF carrying missense variants are (a) likely to respond modestly to currently available modulator therapy, while a small fraction will have pronounced responses, and (b) likely to derive the greatest benefit from combination therapy.

Authors

Sangwoo T. Han, Andras Rab, Matthew J. Pellicore, Emily F. Davis, Allison F. McCague, Taylor A. Evans, Anya T. Joynt, Zhongzhou Lu, Zhiwei Cai, Karen S. Raraigh, Jeong S. Hong, David N. Sheppard, Eric J. Sorscher, Garry R. Cutting

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Figure 2

Variants located in the sixth transmembrane domain (TM6) show modest response to ivacaftor.

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Variants located in the sixth transmembrane domain (TM6) show modest res...
(A) Plot of CFTR processing versus residual function for 54 variants previously expressed in FRT* cells (18) reveals heterogeneous response to 10 μM ivacaftor of partially or well-processed low–residual function missense variants (labeled). Filled green circles represent variants approved by FDA for ivacaftor treatment; G551D labeled in italics. (B) Western blot demonstrating that all TM6 variants produce mature C band CFTR protein when transiently expressed in HEK293 cells and representative Isc tracings of all TM6 variants stably expressed in CF bronchial epithelial (CFBE) cells demonstrating response to acute treatment with 10 μM ivacaftor, recorded as area-corrected current (μA/cm2), over time, measured in minutes represented by tick marks in 1-minute intervals. Data are representative of n ≥ 3 for each variant. (C) Summary data for response of TM6 variants to acute treatment with 10 μM ivacaftor expressed as %WT function. Box plots divide the data by quartile, with the median value indicated by a horizontal line within the box and whiskers extended to minimum and maximum values. (D) Fold response for acute treatment with 10 μM ivacaftor calculated over residual function (10 μM forskolin) of TM6 variants compared with modest-responsive variants identified in this study. Box plots divide the data by quartile, with the median value indicated by a horizontal line within the box and whiskers extended to minimum and maximum values.

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