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Combined inhibition of atypical PKC and histone deacetylase 1 is cooperative in basal cell carcinoma treatment
Amar N. Mirza, Micah A. Fry, Nicole M. Urman, Scott X. Atwood, Jon Roffey, Gregory R. Ott, Bin Chen, Alex Lee, Alexander S. Brown, Sumaira Z. Aasi, Tyler Hollmig, Mark A. Ator, Bruce D. Dorsey, Bruce R. Ruggeri, Craig A. Zificsak, Marina Sirota, Jean Y. Tang, Atul Butte, Ervin Epstein, Kavita Y. Sarin, Anthony E. Oro
Amar N. Mirza, Micah A. Fry, Nicole M. Urman, Scott X. Atwood, Jon Roffey, Gregory R. Ott, Bin Chen, Alex Lee, Alexander S. Brown, Sumaira Z. Aasi, Tyler Hollmig, Mark A. Ator, Bruce D. Dorsey, Bruce R. Ruggeri, Craig A. Zificsak, Marina Sirota, Jean Y. Tang, Atul Butte, Ervin Epstein, Kavita Y. Sarin, Anthony E. Oro
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Research Article Dermatology Oncology

Combined inhibition of atypical PKC and histone deacetylase 1 is cooperative in basal cell carcinoma treatment

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Abstract

Advanced basal cell carcinomas (BCCs) circumvent Smoothened (SMO) inhibition by activating GLI transcription factors to sustain the high levels of Hedgehog (HH) signaling required for their survival. Unfortunately, there is a lack of efficacious therapies. We performed a gene expression–based drug repositioning screen in silico and identified the FDA-approved histone deacetylase (HDAC) inhibitor, vorinostat, as a top therapeutic candidate. We show that vorinostat only inhibits proliferation of BCC cells in vitro and BCC allografts in vivo at high dose, limiting its usefulness as a monotherapy. We leveraged this in silico approach to identify drug combinations that increase the therapeutic window of vorinostat and identified atypical PKC Ɩ/ʎ (aPKC) as a HDAC costimulator of HH signaling. We found that aPKC promotes GLI1-HDAC1 association in vitro, linking two positive feedback loops. Combination targeting of HDAC1 and aPKC robustly inhibited GLI1, lowering drug doses needed in vitro, in vivo, and ex vivo in patient-derived BCC explants. We identified a bioavailable and selective small-molecule aPKC inhibitor, bringing the pharmacological blockade of aPKC and HDAC1 into the realm of clinical possibility. Our findings provide a compelling rationale and candidate drugs for combined targeting of HDAC1 and aPKC in HH-dependent cancers.

Authors

Amar N. Mirza, Micah A. Fry, Nicole M. Urman, Scott X. Atwood, Jon Roffey, Gregory R. Ott, Bin Chen, Alex Lee, Alexander S. Brown, Sumaira Z. Aasi, Tyler Hollmig, Mark A. Ator, Bruce D. Dorsey, Bruce R. Ruggeri, Craig A. Zificsak, Marina Sirota, Jean Y. Tang, Atul Butte, Ervin Epstein, Kavita Y. Sarin, Anthony E. Oro

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Figure 2

aPKC promotes HDAC1 recruitment and deacetylation of GLI1.

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aPKC promotes HDAC1 recruitment and deacetylation of GLI1.
(A) Compariso...
(A) Comparison of LINCS data and PSI RNA-sequencing data demonstrates a strong overlap in expression fold change between aPKC inhibitor (PSI) and HDAC inhibitors. ASZ cells were transfected with (B) HDAC1 (n = 3; 2-way ANOVA) or (C) p300 (n = 3, 2-way ANOVA), and continuous cell growth was measured using Real-Time Glo reagent. The indicated cells were treated with PSI (2.5 μM) after 24 hours, as indicated by the dotted line. (D) Proximity ligation assay between GLI1-HDAC1 and GLI1-HNF1 (control) in ASZ cells (original magnification, ×64 confocal images). Immunoprecipitation of epitope-tagged GLI1 overexpressed in HEK 293T cells (E) and ASZ cells (F), probing for epitope (HA or FLAG), HDAC1, SuFu, and HNF1. Input normalized HDAC1 IP = HDAC1 IP/HDAC1 input (E). (G) Gli1 mRNA measured by qPCR 24 hours after transfection and serum withdrawal in ASZ cells, normalized against GAPDH. WT cells versus K518R-expressing cells treated with PSI (n = 3, ANOVA). (H) GLI1 acetylation assayed by immunoprecipitation of FLAG-GLI1, followed by acetyl lysine and GLI1 immunoblot in ASZ cells (n = 9, Student’s t test). All control measurements are black, while PSI treatment measurements are red. Error bars represent SEM. AcK, acetylated lysine antibody. *P < 0.05, ***P < 0.001, ****P < 0.0001.

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