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DNA methyltransferase 3b regulates articular cartilage homeostasis by altering metabolism
Jie Shen, … , Audrey McAlinden, Regis J. O’Keefe
Jie Shen, … , Audrey McAlinden, Regis J. O’Keefe
Published June 15, 2017
Citation Information: JCI Insight. 2017;2(12):e93612. https://doi.org/10.1172/jci.insight.93612.
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Research Article Bone biology

DNA methyltransferase 3b regulates articular cartilage homeostasis by altering metabolism

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Abstract

Osteoarthritis (OA) is the most common form of arthritis worldwide. It is a complex disease affecting the whole joint but is generally characterized by progressive degradation of articular cartilage. Recent genome-wide association screens have implicated distinct DNA methylation signatures in OA patients. We show that the de novo DNA methyltransferase (Dnmt) 3b, but not Dnmt3a, is present in healthy murine and human articular chondrocytes and its expression decreases in OA mouse models and in chondrocytes from human OA patients. Targeted deletion of Dnmt3b in murine articular chondrocytes results in an early-onset and progressive postnatal OA-like pathology. RNA-Seq and methylC-Seq analyses of Dnmt3b loss-of-function chondrocytes show that cellular metabolic processes are affected. Specifically, TCA metabolites and mitochondrial respiration are elevated. Importantly, a chondroprotective effect was found following Dnmt3b gain of function in murine articular chondrocytes in vitro and in vivo. This study shows that Dnmt3b plays a significant role in regulating postnatal articular cartilage homeostasis. Cellular pathways regulated by Dnmt3b in chondrocytes may provide novel targets for therapeutic approaches to treat OA.

Authors

Jie Shen, Cuicui Wang, Daofeng Li, Taotao Xu, Jason Myers, John M. Ashton, Ting Wang, Michael J. Zuscik, Audrey McAlinden, Regis J. O’Keefe

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Figure 3

Altered epigenomic and transcriptomic signatures in Dnmt3b LOF chondrocytes.

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Altered epigenomic and transcriptomic signatures in Dnmt3b LOF chondrocy...
Genomic DNA and RNA isolated from control and Dnmt3b loss-of-function (LOF) cells for RNA-Seq and methylC-Seq analysis (n = 3). (A) Principal component analysis (PCA) plot of samples based on RNA-Seq data. (B) Heatmap display of top 25 significantly differentially expressed genes between Dnmt3b LOF and control. (C) Word cloud representing gene frequency of enriched function categories from all differentially expressed genes. (D) Global methylation distribution of Dnmt3b LOF and control samples showing that there is no global difference. (E) Methylation difference of differentially methylated regions (DMRs) versus genome as background. (F) Significant overlap of genes near DMRs and differentially expressed genes. P values were calculated by the hypergeometric test.

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