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Interspecies NASH disease activity whole-genome profiling identifies a fibrogenic role of PPARα-regulated dermatopontin
Philippe Lefebvre, Fanny Lalloyer, Eric Baugé, Michal Pawlak, Céline Gheeraert, Hélène Dehondt, Jonathan Vanhoutte, Eloise Woitrain, Nathalie Hennuyer, Claire Mazuy, Marie Bobowski-Gérard, Francesco Paolo Zummo, Bruno Derudas, Ann Driessen, Guy Hubens, Luisa Vonghia, Wilhelmus J. Kwanten, Peter Michielsen, Thomas Vanwolleghem, Jérôme Eeckhoute, An Verrijken, Luc Van Gaal, Sven Francque, Bart Staels
Philippe Lefebvre, Fanny Lalloyer, Eric Baugé, Michal Pawlak, Céline Gheeraert, Hélène Dehondt, Jonathan Vanhoutte, Eloise Woitrain, Nathalie Hennuyer, Claire Mazuy, Marie Bobowski-Gérard, Francesco Paolo Zummo, Bruno Derudas, Ann Driessen, Guy Hubens, Luisa Vonghia, Wilhelmus J. Kwanten, Peter Michielsen, Thomas Vanwolleghem, Jérôme Eeckhoute, An Verrijken, Luc Van Gaal, Sven Francque, Bart Staels
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Research Article Gastroenterology

Interspecies NASH disease activity whole-genome profiling identifies a fibrogenic role of PPARα-regulated dermatopontin

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Abstract

Nonalcoholic fatty liver disease prevalence is soaring with the obesity pandemic, but the pathogenic mechanisms leading to the progression toward active nonalcoholic steatohepatitis (NASH) and fibrosis, major causes of liver-related death, are poorly defined. To identify key components during the progression toward NASH and fibrosis, we investigated the liver transcriptome in a human cohort of NASH patients. The transition from histologically proven fatty liver to NASH and fibrosis was characterized by gene expression patterns that successively reflected altered functions in metabolism, inflammation, and epithelial-mesenchymal transition. A meta-analysis combining our and public human transcriptomic datasets with murine models of NASH and fibrosis defined a molecular signature characterizing NASH and fibrosis and evidencing abnormal inflammation and extracellular matrix (ECM) homeostasis. Dermatopontin expression was found increased in fibrosis, and reversal of fibrosis after gastric bypass correlated with decreased dermatopontin expression. Functional studies in mice identified an active role for dermatopontin in collagen deposition and fibrosis. PPARα activation lowered dermatopontin expression through a transrepressive mechanism affecting the Klf6/TGFβ1 pathway. Liver fibrotic histological damages are thus characterized by the deregulated expression of a restricted set of inflammation- and ECM-related genes. Among them, dermatopontin may be a valuable target to reverse the hepatic fibrotic process.

Authors

Philippe Lefebvre, Fanny Lalloyer, Eric Baugé, Michal Pawlak, Céline Gheeraert, Hélène Dehondt, Jonathan Vanhoutte, Eloise Woitrain, Nathalie Hennuyer, Claire Mazuy, Marie Bobowski-Gérard, Francesco Paolo Zummo, Bruno Derudas, Ann Driessen, Guy Hubens, Luisa Vonghia, Wilhelmus J. Kwanten, Peter Michielsen, Thomas Vanwolleghem, Jérôme Eeckhoute, An Verrijken, Luc Van Gaal, Sven Francque, Bart Staels

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Figure 1

Gene expression patterns in NAFLD and fibrosis progression and regression upon GABY.

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Gene expression patterns in NAFLD and fibrosis progression and regressio...
(A) The cohort was stratified in 3 categories (nonalcoholic fatty liver, NAFL), nonalcoholic steatohepatitis (NASH) without fibrosis (NASH – fibrosis), and NASH with fibrosis (NASH + fibrosis). Differentially expressed genes were identified as described in Supplemental Table 3 and Supplemental Figure 3 (red, upregulated; blue, downregulated) by comparing gene expression patterns of patients displaying no sign of alteration vs. those from patients with pronounced alteration of a given parameter (see Supplemental Figure 2). Gene lists were annotated with the gene ontology (GO) biological process functional annotation table, and resulting biological term enrichment are shown. (B) Evolution of the NAS score and of fibrosis after gastric bypass (GABY). (B) Patient stratification according to histological parameters. Patients were histologically graded and classified according to the NAS score, lobular inflammation, or fibrosis stages prior to surgery (M0) or 1 year after intervention (M12). (C) Genes whose expression was either up- or downregulated in lobular inflammation, ballooning, or fibrosis were selected to build 2 gene lists that are either up- or downregulated in the 3 categories (193 and 58 genes respectively, 2-tailed t test, FC > 1.2, P < 0.05). These gene lists were crossed with those containing genes showing an inverse regulation after GABY. Green lines indicate the 103 genes upregulated in either lobular inflammation, ballooning, or fibrosis whose expression is decreased after GABY. Red lines indicate the 36 genes downregulated in either lobular inflammation, ballooning, or fibrosis whose expression is increased after GABY. Gene expression values are expressed relative to normalized control values (no lobular inflammation, ballooning, or fibrosis) arbitrarily set to 1 and expressed as log2 fold change. (Right) Top ranking hits after a GO term enrichment analysis (Metascape) against biological process (BP), cellular components (CC), or molecular functions (MF) functional annotation tables (FAT) are indicated.

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