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Nicotinamide metabolism regulates glioblastoma stem cell maintenance
Jinkyu Jung, Leo J.Y. Kim, Xiuxing Wang, Qiulian Wu, Tanwarat Sanvoranart, Christopher G. Hubert, Briana C. Prager, Lisa C. Wallace, Xun Jin, Stephen C. Mack, Jeremy N. Rich
Jinkyu Jung, Leo J.Y. Kim, Xiuxing Wang, Qiulian Wu, Tanwarat Sanvoranart, Christopher G. Hubert, Briana C. Prager, Lisa C. Wallace, Xun Jin, Stephen C. Mack, Jeremy N. Rich
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Research Article Oncology Stem cells

Nicotinamide metabolism regulates glioblastoma stem cell maintenance

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Abstract

Metabolic dysregulation promotes cancer growth through not only energy production, but also epigenetic reprogramming. Here, we report that a critical node in methyl donor metabolism, nicotinamide N-methyltransferase (NNMT), ranked among the most consistently overexpressed metabolism genes in glioblastoma relative to normal brain. NNMT was preferentially expressed by mesenchymal glioblastoma stem cells (GSCs). NNMT depletes S-adenosyl methionine (SAM), a methyl donor generated from methionine. GSCs contained lower levels of methionine, SAM, and nicotinamide, but they contained higher levels of oxidized nicotinamide adenine dinucleotide (NAD+) than differentiated tumor cells. In concordance with the poor prognosis associated with DNA hypomethylation in glioblastoma, depletion of methionine, a key upstream methyl group donor, shifted tumors toward a mesenchymal phenotype and accelerated tumor growth. Targeting NNMT expression reduced cellular proliferation, self-renewal, and in vivo tumor growth of mesenchymal GSCs. Supporting a mechanistic link between NNMT and DNA methylation, targeting NNMT reduced methyl donor availability, methionine levels, and unmethylated cytosine, with increased levels of DNA methyltransferases, DNMT1 and DNMT3A. Supporting the clinical significance of these findings, NNMT portended poor prognosis for glioblastoma patients. Collectively, our findings support NNMT as a GSC-specific therapeutic target in glioblastoma by disrupting oncogenic DNA hypomethylation.

Authors

Jinkyu Jung, Leo J.Y. Kim, Xiuxing Wang, Qiulian Wu, Tanwarat Sanvoranart, Christopher G. Hubert, Briana C. Prager, Lisa C. Wallace, Xun Jin, Stephen C. Mack, Jeremy N. Rich

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Figure 3

Reduced availability of methyl donors in mesenchymal glioblastoma stem cells.

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Reduced availability of methyl donors in mesenchymal glioblastoma stem c...
(A) Immunoblot analysis using indicated antibodies in mesenchymal GSCs versus DTCs. (B–I) Metabolite analysis by specific assay kits and liquid chromatography-mass spectrometry (LC-MS/MS) (E and I) in GSCs vs. DTCs. LC-MS/MS was performed with 1 × 107 cells for NAM and 1-MNA measurements. Data represented as Tukey’s box and whisker plot of 4 technical replicates. (J) Unsupervised hierarchical clustering of metabolite relative abundance in GSCs and DTCs from T3264, T3565, and T4121 tumors. Relative abundance for each metabolite was determined as fold-change compared with median of each metabolite across all samples in log2 values. (K) Rank-ordered list of genes (n = 29) from the KEGG nicotinate and nicotinamide metabolism gene set and 4 genes from the methionine salvage pathway (AHCY, BHMT, BHMT2, and MAT2A) based on fold-change between glioblastoma and nontumor specimens in indicated datasets. (L) Integrated pathways of methyl donors and NAD metabolism affected by NNMT and NAMPT gene expression in GSCs. L-met, L-methionine; SAM, S-adenosylmethionine; NAM, nicotinamide; 1-MNA, 1-methylnicotinamide; SAH, S-adenosylhomocysteine; Hcy, homocysteine.

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