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Profiling of circulating microRNAs in children with recent onset of type 1 diabetes
Suheda Erener, Ashish Marwaha, Rusung Tan, Constadina Panagiotopoulos, Timothy J. Kieffer
Suheda Erener, Ashish Marwaha, Rusung Tan, Constadina Panagiotopoulos, Timothy J. Kieffer
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Research Article Endocrinology

Profiling of circulating microRNAs in children with recent onset of type 1 diabetes

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Abstract

Type 1 diabetes (T1D) is an autoimmune disease that is clinically silent until the majority of β cells are destroyed. There is an unmet need for reliable and cost-effective biomarkers to predict and diagnose diabetes at an early stage. A number of stable microRNAs (miRNAs) have been reported in serum and plasma and are now being investigated as biomarkers of different diseases. We measured the levels of 745 miRNAs in sera of children with recent-onset T1D and age-matched controls using locked nucleic acid–enhanced (LNA-enhanced) quantitative PCR profiling. Thirty-five miRNAs were significantly different between the groups, and 27 miRNAs were elevated in T1D. Good discriminating power was obtained for 6 miRNAs (miR-454-3p, miR-222-3p, miR-144-5p, miR-345-5p, miR-24-3p, and miR-140-5p), which were not elevated at later stages of diabetes. In silico pathway analysis, based on inferred miRNA target genes, associated glycosaminoglycan biosynthesis as well as PI3K/Akt, MAPK, and Wnt signaling pathways with early stages of T1D. Among the 27 upregulated miRNAs in T1D, 2 miRNAs significantly correlated with hemoglobin A1c (HbA1c), as did 5 of 8 downregulated miRNAs. A total of 134 miRNAs significantly correlated with HbA1c when stratifying hyperglycemia-induced miRNAs from T1D-specific miRNAs. In conclusion, we have identified a serum miRNA pattern of recent-onset T1D and signaling pathways that may be involved in its pathogenesis.

Authors

Suheda Erener, Ashish Marwaha, Rusung Tan, Constadina Panagiotopoulos, Timothy J. Kieffer

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Figure 2

Multivariate analysis using partial least squares–discriminant analysis.

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Multivariate analysis using partial least squares–discriminant analysis....
(A) Volcano plots showing changes in miRNA levels between children with recent-onset type 1 diabetes (T1D) and controls. The log fold change is depicted on the x axis, and log10 of the P value is shown on the y axis. Data analyzed by Student’s t test. (B) Partial least squares–discriminant analysis 3D plot. Green circles: children with T1D; red circles: control group. (C) The three performance measures (prediction accuracy, R2, and Q2) using a different number of components. The red asterisk indicates the best values of the currently selected measures (Q2). (D) The top 15 miRNAs ranked by variable of importance (VIP) scores.

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