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Pathogenic POLRMT variants in mice impair mtDNA transcription and affect perinatal survival
David Alsina, Diana Rubalcava-Gracia, Kristina Bubb, Rodolfo Garcia-Villegas, Akos Vegvari, Roberta Filograna, Florian A. Rosenberger, Camilla Koolmeister, Nils-Göran Larsson
David Alsina, Diana Rubalcava-Gracia, Kristina Bubb, Rodolfo Garcia-Villegas, Akos Vegvari, Roberta Filograna, Florian A. Rosenberger, Camilla Koolmeister, Nils-Göran Larsson
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Research Article Cell biology Metabolism

Pathogenic POLRMT variants in mice impair mtDNA transcription and affect perinatal survival

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Abstract

Mitochondrial gene expression is essential for oxidative phosphorylation that generates the bulk of the cellular ATP, and mitochondrial dysfunction is a common cause of human metabolic diseases. Recently, the first pathogenic variants in the only known mitochondrial RNA polymerase (POLRMT) were described in patients presenting with a wide variety of clinical manifestations, including hypotonia, short stature, and developmental delay. Here, we modeled two human pathogenic POLRMT variants by creating the corresponding substitutions in mice: the dominant S582F and the recessive R984C variant. Mice homozygous for the R984C variant showed perinatal lethality without apparent embryonic developmental defects, a finding consistent with a failure to adapt to the metabolic transition to oxidative metabolism at birth. Mice carrying the S582F variant were viable and exhibited decreased mitochondrial transcript levels due to impaired de novo transcription. However, mtDNA levels and in organello mtDNA replication remained normal, which recapitulates the molecular phenotypes observed in patients. Altogether, our findings indicate that the conserved arginine near the active site is essential for POLRMT function, while the serine in the intercalating hairpin of the N-terminal domain is required for near-genome length transcription but not primase activity. This study highlights genotype-phenotype differences and provides new insights into POLRMT function.

Authors

David Alsina, Diana Rubalcava-Gracia, Kristina Bubb, Rodolfo Garcia-Villegas, Akos Vegvari, Roberta Filograna, Florian A. Rosenberger, Camilla Koolmeister, Nils-Göran Larsson

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Figure 1

Modeling pathogenic POLRMT variants in mice.

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Modeling pathogenic POLRMT variants in mice.
(A) The cryogenic electron ...
(A) The cryogenic electron microscopic (cryo-EM) structure of human (Hs) POLRMT (colors; Protein Data Bank ID: 6ERQ) was superimposed to the structure of mouse (Mm) POLRMT generated by AlphaFold (gray). The domains of human POLRMT are color-coded as indicated. The location of the POLRMT pathogenic variants, and the corresponding residues in mouse, are indicated by blue (S611F) and red (R1013C) circles and arrowheads. MTS, mitochondrial targeting sequence; NTE, N-terminal extension; PPR, pentatricopeptide repeat domain; NTD, N-terminal domain; CTD, C-terminal domain. (B) Partial amino acid sequence alignment of human (Hs) and mouse (Mm) POLRMT, highlighting the positions of the substituted residues. The locations of the S611F and R1013C variants, and their corresponding mouse residues (S582F and R984C), are boxed and indicated by arrowheads. Asterisks denote identical residues, colons indicate conserved residues, and periods represent semi-conserved residues. Alignment was performed with Clustal Omega (https://www.ebi.ac.uk/jdispatcher/msa/clustalo). (C) Bar graph showing the genotypic distribution of offspring from the Polrmt-knockin mouse lines carrying the S582F (blue) and R984C (red) mutations at weaning. The observed proportions of each genotype are plotted. Dotted lines represent the expected Mendelian ratios: 25% wild type, 50% heterozygous, and 25% homozygous knockin. S582F, n = 305 pups; R984C, n = 132 pups. (D) Violin plot showing the distribution of litter sizes from Polrmt-knockin mouse lines carrying the S582F (blue) and R984C (red) mutations. *Statistically significant difference in litter size (Mann-Whitney test P value = 0.0101). Sample size: S582F, n = 41 litters; R984C, n = 24 litters.

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