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Early-life viral infection generates pathological tissue-resident memory cells that contribute to asthma-like disease
Emma E. Brown, Jie Lan, Olivia B. Parks, Li Fan, Dequan Lou, Alysia McCray, Lisa Mathews, Alexander J. Wardropper, Anna Shull, Michelle L. Manni, Heth R. Turnquist, Kong Chen, Taylor Eddens
Emma E. Brown, Jie Lan, Olivia B. Parks, Li Fan, Dequan Lou, Alysia McCray, Lisa Mathews, Alexander J. Wardropper, Anna Shull, Michelle L. Manni, Heth R. Turnquist, Kong Chen, Taylor Eddens
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Research Article Immunology Infectious disease Pulmonology

Early-life viral infection generates pathological tissue-resident memory cells that contribute to asthma-like disease

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Abstract

Viral lower respiratory tract infections are common early in life and are associated with long-term development of asthma, a chronic condition defined by reversible airflow obstruction secondary to inflammation. Understanding the immunological mechanism connecting these two pathologies observed early in life becomes imperative to guide therapeutic measures. To investigate this connection, neonatal (days 4–6) or adult mice were infected with human metapneumovirus (HMPV) followed by a secondary HMPV infection 6 weeks later. Mice initially infected as neonates demonstrated increased mucus production, eosinophil recruitment, airway hyperresponsiveness, and Th2 T cell differentiation after rechallenge compared with adult mice rechallenged with HMPV. Neonatal HMPV infection led to formation of Th2 clonally expanded tissue-resident memory (TRM) T cells that were absent after adult HMPV. FTY720-mediated disruption of lymphocyte circulation demonstrated that TRMs contributed to pathology. Local depletion of lung CD4+ T cells and JAK2 inhibition mitigated pathology. These findings suggest TRMs uniquely generated after early-life viral infection can contribute to Th2-driven asthma pathology.

Authors

Emma E. Brown, Jie Lan, Olivia B. Parks, Li Fan, Dequan Lou, Alysia McCray, Lisa Mathews, Alexander J. Wardropper, Anna Shull, Michelle L. Manni, Heth R. Turnquist, Kong Chen, Taylor Eddens

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Figure 4

Single-cell RNA-seq of TRM populations after neonatal or adult HMPV infection.

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Single-cell RNA-seq of TRM populations after neonatal or adult HMPV infe...
(A) Uniform manifold approximation and projection (UMAP) visualization of lung TRM populations isolated by flow-sorting 5 weeks after neonatal or adult HMPV infection demonstrating 9 clusters. (B) Expression of Th1, Th2, Treg, and Th17 transcription factors (e.g., Tbx21, Gata3, Foxp3, Rorc) and cytokines (Ifng, Il5, Il10, Il17a) demonstrating populations consistent with these established subsets. (C) Expression of markers corresponding to other cell states, including Pdcd1 (PD-1+), Sell (CD62L, naive), Trgv2 (innate-like T cell), and cycling (Mki67). Expression patterns in B and C and Supplemental Figure 2 were used to manually annotate the 9 clusters shown in A. (D) UMAP visualization of TRM clusters split by group (NeoTRM vs. AdultTRM). (E) Volcano plot of differentially expressed genes in pseudo-bulked NeoTRM versus AdultTRM cells. Genes displayed have Padj < 0.01 and log2FC (≤0.25 or >0.25). (F) Proportion testing of individual clusters in NeoTRM versus AdultTRM. Significance defined as FDR < 0.05 and abs(log2FC > 0.58). (G) Clonotype analysis of TCR sequencing with each bar representing count of an individual TCR. Naive/Tcm cells had no more than 3 of the same TCR per cluster (dashed line). (H) Clonotype expansion in Th1, PD-1+ Th1, Th2, and Th17 clusters.

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