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Tfh2 and a subset of Tfh1 cells associate with antibody-mediated immunity to malaria
Megan S.F. Soon, Damian A. Oyong, Nicholas L. Dooley, Reena Mukhiya, Zuleima Pava, Dean W. Andrew, Jessica R. Loughland, James S. McCarthy, Jo-Anne Chan, James G. Beeson, Christian R. Engwerda, Ashraful Haque, Michelle J. Boyle
Megan S.F. Soon, Damian A. Oyong, Nicholas L. Dooley, Reena Mukhiya, Zuleima Pava, Dean W. Andrew, Jessica R. Loughland, James S. McCarthy, Jo-Anne Chan, James G. Beeson, Christian R. Engwerda, Ashraful Haque, Michelle J. Boyle
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Research Article Immunology Infectious disease

Tfh2 and a subset of Tfh1 cells associate with antibody-mediated immunity to malaria

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Abstract

High-affinity antibody production depends on CD4+ T follicular helper (Tfh) cells. In humans, peripheral blood Tfh cells are heterogenous, as evidenced by differential expression of the chemokine receptors CXCR3 and CCR6, which to date have served to classify 3 subsets, pTfh1, pTfh2, and pTfh17. Although pTfh1 responses dominate during blood-stage Plasmodium infections, a clear association with protective antibody responses remains to be described. We hypothesized that pTfh cells exhibit greater phenotypic and functional heterogeneity than described by CXCR3/CCR6 and that more nuanced pTfh subsets play distinct roles during Plasmodium infection. We mapped pTfh cell heterogeneity in healthy individuals prior to and during controlled human malaria infection (CHMI) using parallel single-cell RNA-Seq and VDJ-Seq. We uncovered 2 pTfh1 subsets or differential phenotypic states, distinguishable by CCR7 expression. Prior to infection, Tfh1-CCR7– cells exhibited higher baseline expression of inflammatory cytokines and genes associated with cytotoxicity. Tfh1-CCR7+ cells had higher germinal center signatures. Indeed, during CHMI, Tfh1-CCR7+, Tfh1-CCR7–, and Tfh2 cells all clonally expanded and became activated. However, only Tfh1-CCR7+ and Tfh2 cells positively associated with protective antibody production. Hence, our data reveal further complexity among human Tfh cells and highlight 2 distinct subsets associated with antibody-mediated immunity to malaria.

Authors

Megan S.F. Soon, Damian A. Oyong, Nicholas L. Dooley, Reena Mukhiya, Zuleima Pava, Dean W. Andrew, Jessica R. Loughland, James S. McCarthy, Jo-Anne Chan, James G. Beeson, Christian R. Engwerda, Ashraful Haque, Michelle J. Boyle

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Figure 1

scRNA-Seq analysis of pTfh cells from healthy individuals.

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scRNA-Seq analysis of pTfh cells from healthy individuals.
(A) Four popu...
(A) Four populations were sorted from pTfh CD4+ cells from 4 healthy donors — 1) CXCR5+PD1–, 2) CXCR5+PD1+ pTfh1, 3) CXCR5+PD1+ pTfh2, and 4) CXCR5+PD1+ pTfh17. Populations were analyzed by 5′ droplet scRNA-Seq for gene expression and TCR sequencing. (B) Uniform manifold approximation and projection (UMAP) of data following integration by donor, with 11 transcriptional subsets indicated. IFNI, type I IFN; Tfh1.17, mixed Tfh1/Tfh17 signature. (C) UMAP of data depicting cell sorted identity. (D) Relative gene expression of genes used to annotate transcriptional clusters. (E) DEGs comparing Tfh1_CCR7neg and Tfh1_CCR7pos subsets. Average log2 FC and –log10 adjusted P values are shown (top panel). Average expression of key genes in Tfh1_CCR7neg and Tfh1_CCR7pos transcriptional clusters (bottom panels). Violin plots show complete data distribution of gene expression across all cells. (F) Relationship between cell sorted identity and transcriptional cluster identity in the dataset. (G) Fate sharing at the individual-clonotype level across transcriptional subsets. Expanded clonotypes (n ≥ 2) with only same fates (exist within the same subset) or different fates are shown. See also Supplemental Figures 1 and 2 and Supplemental Tables 1 and 2.

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