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Cellular and molecular dysregulation of the esophageal epithelium in systemic sclerosis
Matthew Dapas, Margarette H. Clevenger, Hadijat-Kubura M. Makinde, Tyler Therron, Dustin A. Carlson, Mary Carns, Kathleen Aren, Cenfu Wei, Kainat Mian, Lutfiyya N. Muhammad, Carrie Richardson, Parambir S. Dulai, Monique Hinchcliff, John Pandolfino, Harris Perlman, Deborah R. Winter, Marie-Pier Tetreault
Matthew Dapas, Margarette H. Clevenger, Hadijat-Kubura M. Makinde, Tyler Therron, Dustin A. Carlson, Mary Carns, Kathleen Aren, Cenfu Wei, Kainat Mian, Lutfiyya N. Muhammad, Carrie Richardson, Parambir S. Dulai, Monique Hinchcliff, John Pandolfino, Harris Perlman, Deborah R. Winter, Marie-Pier Tetreault
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Research Article Gastroenterology Immunology

Cellular and molecular dysregulation of the esophageal epithelium in systemic sclerosis

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Abstract

Systemic sclerosis (SSc) is a rare autoimmune disease characterized by vasculopathy and fibrosis of the skin and internal organs. Individuals with SSc often suffer from chronic acid reflux and dysphagia due to loss of esophageal motility. To determine whether distinct changes in esophageal epithelial cells contribute to esophageal involvement in SSc, we investigated the stratified squamous esophageal epithelium from proximal and distal biopsies using single-cell RNA sequencing in individuals with SSc compared with those with gastroesophageal reflux disease (GERD) and healthy controls. Cellular and molecular changes in SSc were highly correlated with those seen in GERD, indicating they were secondary to reflux; however, their magnitudes were more pronounced in the proximal esophagus, suggesting that esophageal dysmotility leads to greater proximal acid exposure, which may contribute to aspiration. SSc-specific gene dysregulation implicated immunoregulatory pathways likely pertinent to pathogenic mechanisms. Ligand-receptor interaction analysis revealed enhanced profibrotic signaling between fibroblasts and epithelial cells in SSc. Cell type localization and SSc-specific changes were confirmed by spatial molecular imaging. By offering a comprehensive view of transcriptional dysregulation at single-cell resolution in human esophageal epithelial cells in SSc compared with GERD and healthy tissue, this work clarifies the state of epithelial cells in SSc-induced esophageal dysfunction.

Authors

Matthew Dapas, Margarette H. Clevenger, Hadijat-Kubura M. Makinde, Tyler Therron, Dustin A. Carlson, Mary Carns, Kathleen Aren, Cenfu Wei, Kainat Mian, Lutfiyya N. Muhammad, Carrie Richardson, Parambir S. Dulai, Monique Hinchcliff, John Pandolfino, Harris Perlman, Deborah R. Winter, Marie-Pier Tetreault

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Figure 6

Correlations with clinical phenotypes.

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Correlations with clinical phenotypes.
(A) Heatmap of quantitative clini...
(A) Heatmap of quantitative clinical traits organized using agglomerative, complete hierarchical clustering on Euclidean distances, with pairwise Spearman correlations shown in each cell. (B) SSc cases are plotted on the first 2 PCs of the quantitative clinical traits, colored by esophageal motility phenotype. The relative magnitude and direction of trait correlations with the PCs are shown with black arrows. (C) Correlations between aggregate, relative metallothionein expression and clinical trait PCs in superficial cells in the proximal esophagus. Trendlines with 95% confidence intervals are shown with the unadjusted correlation P value. The metallothionein module score included MT1A, MT1E, MT1F, MT1G, MT1H, MT1M, MT1X, and MT2A. (D) Correlations between superficial clusters (SCs) and clinical trait PC1 in SSc cases. Linear regression trendlines with 95% confidence intervals are shown for each SC. The displayed P values correspond to the highlighted correlations between SC3 and PC1. (E) Box plots showing the proportion of SC3 in superficial cells by esophageal motility phenotype in the proximal and distal esophagus, colored by disease state (HCs, gray; GERD, orange; SSc, purple). AET, acid exposure time; BEDQ, brief esophageal dysphagia questionnaire; DCI, distal contractile integral; DI, distensibility index; EGJ, esophagogastric junction; EGJOO, esophagogastric junction outflow obstruction; FLIP, functional luminal imaging probe panometry; HRM, high-resolution manometry; IEM, ineffective esophageal motility; IRP, integrated relaxation pressure; NEQOL, Northwestern Esophageal Quality of Life; NM, neuromyogenic model.

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