Go to The Journal of Clinical Investigation
  • About
  • Editors
  • Consulting Editors
  • For authors
  • Journal stats
  • Publication ethics
  • Publication alerts by email
  • Transfers
  • Advertising
  • Job board
  • Contact
  • Physician-Scientist Development
  • Current issue
  • Past issues
  • By specialty
    • COVID-19
    • Cardiology
    • Immunology
    • Metabolism
    • Nephrology
    • Oncology
    • Pulmonology
    • All ...
  • Videos
  • Collections
    • In-Press Preview
    • Resource and Technical Advances
    • Clinical Research and Public Health
    • Research Letters
    • Editorials
    • Perspectives
    • Physician-Scientist Development
    • Reviews
    • Top read articles

  • Current issue
  • Past issues
  • Specialties
  • In-Press Preview
  • Resource and Technical Advances
  • Clinical Research and Public Health
  • Research Letters
  • Editorials
  • Perspectives
  • Physician-Scientist Development
  • Reviews
  • Top read articles
  • About
  • Editors
  • Consulting Editors
  • For authors
  • Journal stats
  • Publication ethics
  • Publication alerts by email
  • Transfers
  • Advertising
  • Job board
  • Contact
Neural crest cell signatures drive tumorigenesis in tuberous sclerosis complex and lymphangioleiomyomatosis
Uchenna J. Unachukwu, Enio B. Garcia, Nooralam Rai, Jeanine M. D’Armiento
Uchenna J. Unachukwu, Enio B. Garcia, Nooralam Rai, Jeanine M. D’Armiento
View: Text | PDF
Research Article Cell biology Clinical Research Oncology

Neural crest cell signatures drive tumorigenesis in tuberous sclerosis complex and lymphangioleiomyomatosis

  • Text
  • PDF
Abstract

Tuberous sclerosis complex (TSC) and lymphangioleiomyomatosis (LAM) lack well-defined cellular origins, limiting treatment options. In this report, scRNA-seq of Tsc2+/– mouse renal cystadenomas revealed an 80-fold increase in a tumor cell subpopulation with neural crest features, expressing known cranial neural crest genes as SRY box transcription factor 9 (Sox9), transcription factor activator protein (Tfap2a), and candidate neurocristopathy markers, osteopontin (Spp1), lipocalin-2 (Lcn2), clusterin (Clu), and cytokeratin 18 (Krt18). These signatures were validated in mouse tumors and LAM patient lesions and serum, identifying a tumor phenotype distinct from traditional VEGFD detection. Pathway analysis indicated activation of WNT/SHH signaling, nephric duct formation, and protumorigenic signals, with transcription factor 7 (Tcf7) and ephrin-A ligands as key upstream regulators. Spp1 KO in cranial neural crest cells (CNCCs) significantly reduced proliferation (28%–33%), migration (54%–76%), and invasion (29%–64%) without affecting viability, while Tsc2 KO increased viability 3- to 6-fold with minimal effect on chemotaxis. Elevated serum levels of SPP1 and KRT18 in 1 subset of patients with LAM, decreased LCN2 in nearly all cases, and distinct increases in VEGFD in a separate subset suggest complementary roles for these biomarkers. Overall, findings support a neurocristopathic model of tumor development in TSC and LAM and identify potential biomarkers and therapeutic targets beyond mTOR inhibition.

Authors

Uchenna J. Unachukwu, Enio B. Garcia, Nooralam Rai, Jeanine M. D’Armiento

×

Figure 2

Pathogenic NCCs in Tsc2+/– mouse renal tumors.

Options: View larger image (or click on image) Download as PowerPoint
Pathogenic NCCs in Tsc2+/– mouse renal tumors.
(A and B) Cell type clust...
(A and B) Cell type clustering of scRNA-seq data from WT mice (A) and Tsc2+/– mice (B) based on the Platt-scaled probabilistic fit between DEGs and canonical cell type signatures curated in the Qiagen CLC gene ontology database. Cell types annotated with ≤ 50% confidence are ranked by abundance as ‘Cell Type (all)’ in the legends for A and B; cell clusters 1-8 were also predicted with high confidence (>50%; Table 1). (C and D) Magnified images show CNCCs (dark blue arrows) in Cluster 2 of WT mouse kidney (C), and as dark- blue hued cells in Cluster 8 of Tsc2+/– renal tumors (D), identified with high confidence. (E and F) Intercluster analyses reveal activation of tumorigenic pathways (E) and biofunctions (F) mainly in Clusters 6 and 8, with orange and blue hues representing up- and downregulation, and gray indicating insignificant pathways. (G) CNCCs occur mostly in Tsc2+/– Cluster 8 (n = 796 low confidence; n = 165 high confidence). (H–L) Expression of canonical renal tumor markers — Gpnmb (H), Ctsk (I), Vegfd (J) — and neurocristopathic markers — Clu (K), Spp1 (L) — with the percentage of gene-expressing cells per cluster indicated. Analyses were performed using Qiagen CLC Genomics Workbench v23.0.4 and Ingenuity Pathway Analysis (IPA) v68752261.

Copyright © 2026 American Society for Clinical Investigation
ISSN 2379-3708

Sign up for email alerts