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The MUC5B promoter variant results in proteomic changes in the nonfibrotic lung
Jeremy A. Herrera, Mark Maslanka, Rachel Z. Blumhagen, Rachel Blomberg, Nyan Ye Lwin, Janna Brancato, Carlyne D. Cool, Jonathan P. Huber, Jonathan S. Kurche, Chelsea M. Magin, Kirk C. Hansen, Ivana V. Yang, David A. Schwartz
Jeremy A. Herrera, Mark Maslanka, Rachel Z. Blumhagen, Rachel Blomberg, Nyan Ye Lwin, Janna Brancato, Carlyne D. Cool, Jonathan P. Huber, Jonathan S. Kurche, Chelsea M. Magin, Kirk C. Hansen, Ivana V. Yang, David A. Schwartz
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Research Article Genetics Pulmonology

The MUC5B promoter variant results in proteomic changes in the nonfibrotic lung

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Abstract

The gain-of-function MUC5B promoter variant is the dominant risk factor for the development of idiopathic pulmonary fibrosis (IPF). However, its impact on protein expression in both nonfibrotic control and IPF lung specimens has not been well characterized. Utilizing laser capture microdissection coupled to mass spectrometry, we investigated the proteomic profiles of airway and alveolar epithelium in nonfibrotic controls (n = 12) and IPF specimens (n = 12), stratified by the MUC5B promoter variant. Through qualitative and quantitative analyses, as well as pathway analysis and immunohistological validation, we have identified a distinct MUC5B-associated protein profile. Notably, the nonfibrotic control alveoli exhibited substantial MUC5B-associated protein changes, with an increase in IL-3 signaling. Additionally, we found that epithelial cells overlying IPF fibroblastic foci clustered closely to alveolar epithelia and expressed proteins associated with cellular stress pathways. In conclusion, our findings suggest that the MUC5B promoter variant leads to protein changes in alveolar and airway epithelium that appear to be associated with initiation and progression of lung fibrosis.

Authors

Jeremy A. Herrera, Mark Maslanka, Rachel Z. Blumhagen, Rachel Blomberg, Nyan Ye Lwin, Janna Brancato, Carlyne D. Cool, Jonathan P. Huber, Jonathan S. Kurche, Chelsea M. Magin, Kirk C. Hansen, Ivana V. Yang, David A. Schwartz

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Figure 4

IPF honeycomb cysts are defined by remodeling of epithelial adherens junctions.

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IPF honeycomb cysts are defined by remodeling of epithelial adherens jun...
(A) Volcano plot comparing IPF honeycomb cyst (HC) and IPF small airways. (B) The subset of proteins associated with “remodeling of epithelial adherens junctions,” showing the negative natural log of adjusted P values plotted against the log2(fold change) for each protein. (C) A heatmap displaying z scores for the significantly changed “remodeling of epithelial adherens junctions” proteins, comparing IPF HC, IPF small airways, and nonfibrotic control small airways. (D and E) Volcano plots comparing MUC5B promoter variant and WT allele in (D) the subset of significantly changed IPF HC proteins in A and (E) the subset of all significantly changed airway proteins in IPF and nonfibrotic controls while controlling for region. n = 12 per group (6 WT and 6 MUC5B promoter variant).

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