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Rapamycin immunomodulation utilizes time-dependent alterations of lymph node architecture, leukocyte trafficking, and gut microbiome
Long Wu, … , Bing Ma, Jonathan S. Bromberg
Long Wu, … , Bing Ma, Jonathan S. Bromberg
Published April 22, 2025
Citation Information: JCI Insight. 2025;10(8):e186505. https://doi.org/10.1172/jci.insight.186505.
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Research Article Immunology Microbiology

Rapamycin immunomodulation utilizes time-dependent alterations of lymph node architecture, leukocyte trafficking, and gut microbiome

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Abstract

Transplant recipients require lifelong, multimodal immunosuppression to prevent rejection by reducing alloreactive immunity. Rapamycin is known to modulate adaptive and innate immunity, but its full mechanism remains incompletely understood. We investigated the understudied effects of rapamycin on lymph node (LN) architecture, leukocyte trafficking, and gut microbiome and metabolism after 3 (early), 7 (intermediate), and 30 (late) days of rapamycin treatment. Rapamycin significantly reduced CD4+ T cells, CD8+ T cells, and Tregs in peripheral LNs, mesenteric LNs, and spleen. Rapamycin induced early proinflammation transition to protolerogenic status by modulating the LN laminin α4/α5 expression ratios (La4/La5) through LN stromal cells, laminin α5 expression, and adjustment of Treg numbers and distribution. Additionally, rapamycin shifted the Bacteroides/Firmicutes ratio and increased amino acid bioavailability in the gut lumen. These effects were evident by 7 days and became most pronounced by 30 days in naive mice, with changes as early as 3 days in allogeneic splenocyte-stimulated mice. These findings reveal what we believe to be a novel mechanism of rapamycin action through time-dependent modulation of LN architecture and gut microbiome, which orchestrates changes in immune cell trafficking, providing a framework for understanding and optimizing immunosuppressive therapies.

Authors

Long Wu, Allison Kensiski, Samuel J. Gavzy, Hnin Wai Lwin, Yang Song, Michael T. France, Ram Lakhan, Dejun Kong, Lushen Li, Vikas Saxena, Wenji Piao, Marina W. Shirkey, Valeria R. Mas, Bing Ma, Jonathan S. Bromberg

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Figure 2

Effects of rapamycin on LN cell content, cell distribution, and structure.

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Effects of rapamycin on LN cell content, cell distribution, and structur...
(A and B) IHC of CR and HEV La4/La5 on days 3, 7, and 30 of pLN (A) and mLN (B). (C and D) IHC of CR and HEV Foxp3+ Tregs on days 3, 7, and 30 of pLN (C) and mLN (D). (E and F) Heatmaps depict changes in expression with rapamycin relative to control in pLN (E) and mLN (F). There were 1–3 LNs/mouse, 3 mice/group, 2–3 sections/LN group, and 7–30 fields/slide. Each dot in the graph represents 1 field. One-way ANOVA. *P < 0.05; **P < 0.01, ***P < 0.001, ****P < 0.0001.

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