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GATA2 mutation is associated with immune dysfunction and increased Mycobacterium haemophilum susceptibility in immunocompromised individuals
Ananya Gupta, Shail B. Mehta, Abhimanyu, Bruce A. Rosa, John Martin, Mushtaq Ahmed, Shyamala Thirunavukkarasu, Farheen Fatma, Gaya K. Amarasinghe, Makedonka Mitreva, Thomas C. Bailey, David B. Clifford, Shabaana A. Khader
Ananya Gupta, Shail B. Mehta, Abhimanyu, Bruce A. Rosa, John Martin, Mushtaq Ahmed, Shyamala Thirunavukkarasu, Farheen Fatma, Gaya K. Amarasinghe, Makedonka Mitreva, Thomas C. Bailey, David B. Clifford, Shabaana A. Khader
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Research Article Immunology Infectious disease

GATA2 mutation is associated with immune dysfunction and increased Mycobacterium haemophilum susceptibility in immunocompromised individuals

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Abstract

Infections with nontuberculous mycobacterium (NTM) are on the rise. Here, we investigated an uncommon NTM infection, by M. haemophilum (Mh, n = 4), from a shared geographic location in the United States. All patients had underlying immunosuppressive conditions or treatments. We identified that all these individuals had a nonsynonymous mutation in GATA2 gene, which was absent in healthy controls (HCs, n = 4) from the same geographic area (Missouri, USA). Whole blood from these individuals had attenuated cytokine responses to Mh stimulation for IL-1β, IL-6, IL-8, MIP-1α and MIP-1β, but not to phytohemagglutinin (PHA) or another NTM, M. abscessus. Impaired whole blood transcriptional responses in individuals with GATA2 mutation included heightened Ras-homolog (Rho) guanosine triphosphate hydrolases (GTPase) and lowered TGF-β responses, among others. Our results highlight that, comparatively, M. abscessus and Mh elicit differential immune responses in humans. We identify a 23-gene signature that distinguished host response to Mh and M. abscessus and show that in vitro GATA2 siRNA knockdown indeed attenuated cytokine responses to Mh. Thus, we provide evidence that links GATA2 mutation and immune dysfunction in individuals with compromised immunity to Mh infection in humans and outline host factors associated with the immune response of this clinically relevant NTM.

Authors

Ananya Gupta, Shail B. Mehta, Abhimanyu, Bruce A. Rosa, John Martin, Mushtaq Ahmed, Shyamala Thirunavukkarasu, Farheen Fatma, Gaya K. Amarasinghe, Makedonka Mitreva, Thomas C. Bailey, David B. Clifford, Shabaana A. Khader

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Figure 3

Mh-infected patients show impaired transcriptional response to Mh in vitro, which is GATA2 dependent.

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Mh-infected patients show impaired transcriptional response to Mh in vi...
(A) Number of differentially expressed genes (DEGs) in response whole blood stimulation to HK Mh add Mab in HCs (n = 3) and Mh-infected patients (n = 4). (B) Overlap of upregulated genes to Mh stimulation in HC and MH-infected patients. (C) Reactome pathway enrichment of the common 23 genes in B. (D) Overlap of downregulated genes to Mh stimulation in HC and Mh-infected patients. (E) Reactome pathway enrichment of the common 333 genes in D. (F) The pathway enrichment of the 17 exclusively upregulated genes in Mh-infected (Reactome). (G) Pathway enrichment of the 71 exclusively downregulated genes in Mh-infected patients implemented in Enrichr (113, 115, 116). (H) Putative TF enrichment of up and downregulated genes exclusively regulated in Mh-infected individuals. (I and J) The summed z-pathway score of the top up- and downregulated pathway for each condition. Each dot represents an individual. Two-way ANOVA with Sidak’s multiple correction was used. *P < 0.05. (K) Reduced cytokine levels after GATA2 knockdown using siRNA in human PBMCs (n = 4) as compared with scrambled and unstimulated controls. Kruskal-Wallis test with multiple comparisons is reported. Data are shown as mean ± SD. (L) Multiplex cytokine assay shows widespread reduction in inflammatory responses in healthy PBMCs (n = 2) upon GATA2 siRNA treatment to Mh stimulation. A heatmap of log2FC of cytokine and chemokine levels over the levels in unstimulated, showing scrambled versus siRNA treated PBMCs upon Mh stimulation. Two-way ANOVA results are shown with Fisher’s LSD. *P < 0.05, **P < 0.01.

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