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Two DRB3 residues predictively associate with the progression to type 1 diabetes among DR3 carriers
Lue Ping Zhao, … , Daniel E. Geraghty, Åke Lernmark
Lue Ping Zhao, … , Daniel E. Geraghty, Åke Lernmark
Published March 4, 2025
Citation Information: JCI Insight. 2025;10(7):e184348. https://doi.org/10.1172/jci.insight.184348.
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Research Article Genetics Immunology

Two DRB3 residues predictively associate with the progression to type 1 diabetes among DR3 carriers

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Abstract

HLA-DR genes are associated with the progression from stage 1 and stage 2 to onset of stage 3 type 1 diabetes (T1D), after accounting HLA-DQ genes with which they are in high linkage disequilibrium. Based on an integrated cohort of participants from 2 completed clinical trials, this investigation finds that, sharing a haplotype with the DRB1*03:01 (DR3) allele, DRB3*01:01:02 and *02:02:01 have respectively negative and positive associations with the progression. Furthermore, we uncovered 2 residues (β11, β26, participating in pockets 6 and 4, respectively) on the DRB3 molecule responsible for the progression among DR3 carriers; motif RY and LF respectively delay and promote the progression (hazard ratio [HR] = 0.73 and 2.38, P = 0.039 and 0.017, respectively). Two anchoring pockets 6 and 4 probably bind differential autoantigenic epitopes. We further investigated the progression association with the motifs RY and LF among carriers of DR3 and found that carriers of the motif LF have significantly faster progression than carriers of RY (HR = 1.48, P = 0.019 in unadjusted analysis; HR = 1.39, P = 0.047 in adjusted analysis), results of which provide an impetus to examine the possible role of specific DRB3-binding peptides in the progression to T1D.

Authors

Lue Ping Zhao, George K. Papadopoulos, Jay S. Skyler, William W. Kwok, George P. Bondinas, Antonis K. Moustakas, Ruihan Wang, Chul-Woo Pyo, Wyatt C. Nelson, Daniel E. Geraghty, Åke Lernmark

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Figure 1

Tilted T Cell Receptor view of HLA-DRB3*01:01 in complex with the platelet integrin peptide.

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Tilted T Cell Receptor view of HLA-DRB3*01:01 in complex with the platel...
Tilted T Cell Receptor view of HLA-DRB3*01:01 in complex with the platelet integrin peptide associated with fetal and neonatal alloimmune thrombocytopenia (peptide sequence AWRSDEALPLG, anchors in bold, 2Q6W.pdb) (15). Tilting was done so that as many of the involved residues would be exposed to view. The concerned residues are β11, β26, and β86, as shown by HOH analysis, and residues β28, β30, β37, β38, β51, β57, β60, β74, β183, and b189, which are in absolute LD to β26 in all DRB3 alleles. The secondary structure of the 2 polypeptide chains of DRB3 (α and β) are shown as line ribbons, colored according to their different secondary structural elements: α-helix in red, β-sheet in turquoise, and β-turn and random coil in green. The residues of the antigenic peptide are in space-filling form (atomic color convention: carbon, gray; oxygen, red; nitrogen, cyan; hydrogen, white; sulfur, yellow) and labeled in 3-letter code. The pertinent residues shown to be significant in HOH analysis, and those in absolute LD with β26, are in stick form, with the same color convention.

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