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Tissue-resident memory T cells contribute to protection against heterologous SARS-CoV-2 challenge
Abby Odle, Meenakshi Kar, Abhishek K. Verma, Alan Sariol, David K. Meyerholz, Mehul S. Suthar, Lok-Yin Roy Wong, Stanley Perlman
Abby Odle, Meenakshi Kar, Abhishek K. Verma, Alan Sariol, David K. Meyerholz, Mehul S. Suthar, Lok-Yin Roy Wong, Stanley Perlman
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Research Article COVID-19 Virology

Tissue-resident memory T cells contribute to protection against heterologous SARS-CoV-2 challenge

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Abstract

New vaccine formulations are based on circulating strains of virus, which have tended to evolve to more readily transmit human to human and to evade the neutralizing antibody response. An assumption of this approach is that ancestral strains of virus will not recur. Recurrence of these strains could be a problem for individuals not previously exposed to ancestral spike protein. Here, we addressed this by infecting mice with recent SARS-CoV-2 variants and then challenging them with a highly pathogenic mouse-adapted virus closely related to the ancestral Wuhan-1 strain (SARS2-N501YMA30). We found that challenged mice were protected from severe disease, despite having low or no neutralizing antibodies against SARS2-N501YMA30. T cell depletion from previously infected mice did not diminish infection against clinical disease, although it resulted in delayed virus clearance in the nasal turbinate and, in some cases, in the lungs. Levels of tissue-resident memory T cells were significantly elevated in the nasal turbinate of previously infected mice compared with that of naive mice. However, this phenotype was not seen in lung tissues. Together, these results indicate that the immune response to newly circulating variants afforded protection against reinfection with the ancestral virus that was in part T cell based.

Authors

Abby Odle, Meenakshi Kar, Abhishek K. Verma, Alan Sariol, David K. Meyerholz, Mehul S. Suthar, Lok-Yin Roy Wong, Stanley Perlman

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Figure 2

Sequential infection of mice with SARS-CoV-2 variants of concerns followed by SARS2-N501YMA30.

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Sequential infection of mice with SARS-CoV-2 variants of concerns follow...
(A) Four-month-old (XBB.1.5) or 6-month-old (other SARS-CoV-2 variants) C57BL/6 mice were infected intranasally with SARS-CoV-2 variants or mock infected and were challenged with a lethal dose of SARS2-N501YMA30 3 months later. (B) Mice previously infected with B.1.351 (blue), BA.2.12.1 (orange), or XBB.1.5 (purple) or mock infected (PBS) were assessed for weight loss and survival after SARS2-N501YMA30 challenge. In some experiments, T cells were depleted at the time of challenge (depleted). B.1.351 data are from 1 experiment. PBS (n = 5) and B.1.351 (n = 4). BA.2.12.1 data are from 2 independent experiments. PBS (n = 9), PBS depleted (n = 4), BA.2.12.1 (n = 7), and BA.2.12.1 depleted (n = 5). XBB.1.5 data are from 2 independent experiments. PBS (n = 6), XBB.1.5 (n = 8), and XBB.1.5 depleted (n = 7). Red statistics denote PBS vs. XBB.1.5 depleted, black statistics denote PBS vs. XBB.1.5. P values were measured by log-rank followed by Bonferroni’s correction for multiple comparisons. (C) Sera obtained prior to challenge were tested for SARS2-N501YMA30 neutralizing antibodies. B.1.351 (blue), BA.2.12.1 (orange), BA.5 (green) or XBB.1.5 (purple), B.1.351 (n = 7), BA.2.12.1 (n = 7), BA.5 (n = 32), XBB.1.5 (n = 19), and naive (n = 5/group). Antibody titers were determined by the highest antibody dilution that results in a 50% reduction in the number of foci. Average titer is listed above each group. Data in B and C are shown as mean ± SEM. LOD = 20 PFU. P values measured by Mann Whitney U test (BA.2.12.1 and B.1.351) or 1-way ANOVA followed by Tukey’s test for multiple comparisons (BA.5). *P < 0.05, **P < 0.01, ***P < 0.001, ****P < 0.0001.

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