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Mechanisms and efficacy of small molecule latency-promoting agents to inhibit HIV reactivation ex vivo
Julie Janssens, Peggy Kim, Sun Jin Kim, Adam Wedrychowski, Gayatri N. Kadiyala, Peter W. Hunt, Steven G. Deeks, Joseph K. Wong, Steven A. Yukl
Julie Janssens, Peggy Kim, Sun Jin Kim, Adam Wedrychowski, Gayatri N. Kadiyala, Peter W. Hunt, Steven G. Deeks, Joseph K. Wong, Steven A. Yukl
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Research Article Virology

Mechanisms and efficacy of small molecule latency-promoting agents to inhibit HIV reactivation ex vivo

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Abstract

Drugs that inhibit HIV transcription and/or reactivation of latent HIV have been proposed as a strategy to reduce HIV-associated immune activation or to achieve a functional cure, yet comparative studies are lacking. We evaluated 26 drugs, including drugs previously reported to inhibit HIV transcription (inhibitors of Tat-dependent HIV transcription, Rev, HSF-1/PTEF-b, HSP90, Jak/Stat, or SIRT1/Tat deacetylation) and other agents that were not tested before (inhibitors of PKC, NF-κB, SP-1, or histone acetyltransferase; NR2F1 agonists), elongation (inhibitors of CDK9/ PTEF-b), completion (inhibitors of PolyA-polymerase), or splicing (inhibitors of human splice factors). To investigate if those drugs would vary in their ability to affect different blocks to HIV transcription, we measured levels of initiated, elongated, midtranscribed, completed, and multiply spliced HIV RNA in PBMCs from antiretroviral therapy–suppressed individuals following ex vivo treatment with each drug and subsequent T cell activation. We identified new drugs that prevent HIV reactivation, including CDK and splicing inhibitors. While some drugs inhibited 1 or 2 steps, other drugs (CDK inhibitors, splicing inhibitors, tanespimycin, and triptolide) inhibited multiple stages of HIV transcription and blocked the production of supernatant viral RNA. These drugs and targets deserve further study in strategies aimed at reducing HIV-associated immune activation or achieving a functional cure.

Authors

Julie Janssens, Peggy Kim, Sun Jin Kim, Adam Wedrychowski, Gayatri N. Kadiyala, Peter W. Hunt, Steven G. Deeks, Joseph K. Wong, Steven A. Yukl

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Figure 4

Some LPAs sustain reduced HIV transcription for 6 days, depending on the study participant.

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Some LPAs sustain reduced HIV transcription for 6 days, depending on the...
Each drug was tested in PBMCs from at least 6 ART-suppressed study participants (except for KRIBB11, n = 5). PBMCs were aliquoted into wells at 6 × 106 cells/well. After activation, the cells were cultured with antiretrovirals in the presence of individual drugs in DMSO or DMSO alone as control. All conditions were tested in the presence of CD3/28 T cell–activating beads, except for the unactivated DMSO condition. After 6 days, total cellular RNA was extracted, and the progression through different stages of HIV transcription was quantified by measuring the levels of initiated (TAR), 5′ elongated (LLTR), midtranscribed/unspliced (Pol), completed (PolyA), and multiply spliced (TatRev) HIV transcripts. (A) The levels of all HIV transcripts were normalized to 1 μg of total cellular RNA and expressed as a percentage of the activated DMSO control (% of activated DMSO). Medians are shown as well as the individual values per study participant in different colors. (B–D) The effect of each drug on HIV transcriptional progression after activation was analyzed by the ratio of one HIV transcript to another. Ratios are independent of HIV infection frequency or normalization to cell numbers. Shown are the proportion of (B) all HIV transcripts that are elongated (LLTR/TAR), (C) elongated HIV transcripts that are completed (PolyA/LLTR), and (D) completed transcripts that are multiply spliced (TatRev/PolyA). Medians and IQR are presented, along with the individual values per study participant in different colors. P values were calculated using Wilcoxon’s signed-rank test: *P < 0.05.

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