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Reprogramming of epidermal keratinocytes by PITX1 transforms the cutaneous cellular landscape and promotes wound healing
Andrew M. Overmiller, Akihiko Uchiyama, Emma D Hope, Subhashree Nayak, Christopher G. O’Neill, Kowser Hasneen, Yi-Wen Chen, Faiza Naz, Stefania Dell’Orso, Stephen R. Brooks, Kan Jiang, Maria I. Morasso
Andrew M. Overmiller, Akihiko Uchiyama, Emma D Hope, Subhashree Nayak, Christopher G. O’Neill, Kowser Hasneen, Yi-Wen Chen, Faiza Naz, Stefania Dell’Orso, Stephen R. Brooks, Kan Jiang, Maria I. Morasso
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Research Article Dermatology

Reprogramming of epidermal keratinocytes by PITX1 transforms the cutaneous cellular landscape and promotes wound healing

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Abstract

Cutaneous wound healing is a slow process that often terminates with permanent scarring while oral wounds, in contrast, regenerate after damage faster. Unique molecular networks in epidermal and oral epithelial keratinocytes contribute to the tissue-specific response to wounding, but key factors that establish those networks and how the keratinocytes interact with their cellular environment remain to be elucidated. The transcription factor PITX1 is highly expressed in the oral epithelium but is undetectable in cutaneous keratinocytes. To delineate if PITX1 contributes to oral keratinocyte identity, cell-cell interactions, and the improved wound healing capabilities, we ectopically expressed PITX1 in the epidermis of murine skin. Using comparative analysis of murine skin and oral (buccal) mucosa with single-cell RNA-Seq and spatial transcriptomics, we found that PITX1 expression enhances epidermal keratinocyte migration and proliferation and alters differentiation to a quasi–oral keratinocyte state. PITX1+ keratinocytes reprogrammed intercellular communication between skin-resident cells to mirror buccal tissue while stimulating the influx of neutrophils that establish a pro-inflammatory environment. Furthermore, PITX1+ skin healed significantly faster than control skin via increased keratinocyte activation and migration and a tunable inflammatory environment. These results illustrate that PITX1 programs oral keratinocyte identity and cellular interactions while revealing critical downstream networks that promote wound closure.

Authors

Andrew M. Overmiller, Akihiko Uchiyama, Emma D Hope, Subhashree Nayak, Christopher G. O’Neill, Kowser Hasneen, Yi-Wen Chen, Faiza Naz, Stefania Dell’Orso, Stephen R. Brooks, Kan Jiang, Maria I. Morasso

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Figure 4

PITX1 expression alters the balance of fibroblasts and immune cells in the skin.

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PITX1 expression alters the balance of fibroblasts and immune cells in t...
(A) UMAPs of fibroblast subpopulations in control skin (n = 8), PITX1+ skin (n = 8), and buccal mucosa pools (n = 7) (left). Proportion plot of fibroblast subpopulations (right). (B) UMAPs of immune cell subpopulations in control skin (n = 8), PITX1+ skin (n = 8), and buccal mucosa pools (n = 7) (left). Proportion plot of immune cell subpopulations (right). Significance for proportion plots was assessed by proportionality testing followed by ad hoc comparisons against the corresponding cell type in control skin to derived log2 fold-change (log2FC) (*P < 0.01 & log2FC > |1.5|, **P < 0.01 & log2FC > |2|, ***P < 0.01 & log2FC > |4|). (C) Representative Xenium of male control skin (n = 3) and PITX1+ skin (n = 4), highlighting neutrophils, IFE keratinocytes, HF keratinocytes, and sebaceous gland keratinocytes. Transcripts of S100a8, Il1b, and Ccr1 are indicated by colored dots. Scale bar = 200 μm. (D) UMAP of control skin and PITX1 skin neutrophil subpopulations. (E) Circos plot showing PITX1+ skin-enriched ligand-receptor (L-R) interactions predicted by MultiNicheNet to originate from Neutrophil 1 subpopulation (sender). Arrows point to cell subpopulations that are predicted to be engaged by Neutrophil 1 (receivers). Genes constituting predicted signaling pairs are listed on outside of plot.

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