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Repurposing of lonafarnib as a treatment for SARS-CoV-2 infection
Mohsin Khan, Parker Irvin, Seung Bum Park, Hannah M. Ivester, Inna Ricardo-Lax, Madeleine Leek, Ailis Grieshaber, Eun Sun Jang, Sheryl Coutermarsh-Ott, Qi Zhang, Nunziata Maio, Jian-Kang Jiang, Bing Li, Wenwei Huang, Amy Q. Wang, Xin Xu, Zongyi Hu, Wei Zheng, Yihong Ye, Tracey Rouault, Charles Rice, Irving C. Allen, T. Jake Liang
Mohsin Khan, Parker Irvin, Seung Bum Park, Hannah M. Ivester, Inna Ricardo-Lax, Madeleine Leek, Ailis Grieshaber, Eun Sun Jang, Sheryl Coutermarsh-Ott, Qi Zhang, Nunziata Maio, Jian-Kang Jiang, Bing Li, Wenwei Huang, Amy Q. Wang, Xin Xu, Zongyi Hu, Wei Zheng, Yihong Ye, Tracey Rouault, Charles Rice, Irving C. Allen, T. Jake Liang
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Research Article COVID-19 Virology

Repurposing of lonafarnib as a treatment for SARS-CoV-2 infection

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Abstract

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), which causes coronavirus disease 2019 (COVID-19), has emerged as a global pandemic pathogen with high mortality. While treatments have been developed to reduce morbidity and mortality of COVID-19, more antivirals with broad-spectrum activities are still needed. Here, we identified lonafarnib (LNF), a Food and Drug Administration–approved inhibitor of cellular farnesyltransferase (FTase), as an effective anti–SARS-CoV-2 agent. LNF inhibited SARS-CoV-2 infection and acted synergistically with known anti-SARS antivirals. LNF was equally active against diverse SARS-CoV-2 variants. Mechanistic studies suggested that LNF targeted multiple steps of the viral life cycle. Using other structurally diverse FTase inhibitors and a LNF-resistant FTase mutant, we demonstrated a key role of FTase in the SARS-CoV-2 life cycle. To demonstrate in vivo efficacy, we infected SARS-CoV-2–susceptible humanized mice expressing human angiotensin-converting enzyme 2 (ACE2) and treated them with LNF. LNF at a clinically relevant dose suppressed the viral titer in the respiratory tract and improved pulmonary pathology and clinical parameters. Our study demonstrated that LNF, an approved oral drug with excellent human safety data, is a promising antiviral against SARS-CoV-2 that warrants further clinical assessment for treatment of COVID-19 and potentially other viral infections.

Authors

Mohsin Khan, Parker Irvin, Seung Bum Park, Hannah M. Ivester, Inna Ricardo-Lax, Madeleine Leek, Ailis Grieshaber, Eun Sun Jang, Sheryl Coutermarsh-Ott, Qi Zhang, Nunziata Maio, Jian-Kang Jiang, Bing Li, Wenwei Huang, Amy Q. Wang, Xin Xu, Zongyi Hu, Wei Zheng, Yihong Ye, Tracey Rouault, Charles Rice, Irving C. Allen, T. Jake Liang

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Figure 4

Mechanistic studies of LNF’s antiviral action.

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Mechanistic studies of LNF’s antiviral action.
(A) Schematic of drug tre...
(A) Schematic of drug treatment plan, where solid dark and empty areas represent the presence and absence of the drug, respectively. The 0 hour represents the time of infection. DMSO was used as control. (B) VeroE6 cells were infected with SARS-CoV-2 and treated with DMSO or LNF (10 μM) as described in the Methods and schematic in A. The drug was present for the entire duration or removed as per the schematic by replacing with the media containing DMSO only. At 24 hours after infection, the luciferase activity was measured and graphed as percentage replication relative to the untreated, infected control group. Data are presented as mean ± SEM (n = 8) and the figure is representative of at least 3 independent experiments. (C) Representative microscopic images of VeroTA6 cells (top) and VeroE6 (bottom) that were infected at 0.1 MOI for 4 hours and treated with various compounds (10 μM LNF, 5 μM E64d, and 5 μM camostat). The cells were fixed and stained with antibodies against spike protein (red). Original magnification, ×10. (D) The infectivity of virus in the presence of compounds was calculated and normalized to DMSO control. A total of 9 random areas were captured and average infectivity for each treatment group was plotted as mean ± SEM (n = 9). This experiment was conducted 2 times. NS, P > 0.05; **P < 0.01, ****P < 0.0001 by 1-way ANOVA with Dunnett’s test for multiple comparisons to DMSO control (B and D). (E and F) The SARS-CoV-2 replicon and RNA delivery particles (RDPs) were used to prepare the dose-response curve for LNF. For replicon (E), Huh7.5 cells were electroporated with the Gluc replicon and treated with multiple concentrations of LNF. After 24 hours, Gluc signal was measured and normalized to vehicle control. The representative graph shows mean values of 3 replicates and error bars indicate SEM (n = 4). For RDP assay (F), RDPs were generated by trans complementation of the SARS-CoV-2 replicon with S protein in producer cells. Huh7.5 ACE-TMPRSS2 cells were then transduced with the Gluc RDPs and treated with multiple concentrations of LNF. Twenty-four hours later, Gluc activity was measured and normalized. The data represent mean values of 3 replicates and error bars indicate SEM (n = 4). The results are representative of 3 independent experiments.

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