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Transcriptional analysis of primary ciliary dyskinesia airway cells reveals a dedicated cilia glutathione pathway
Jeffrey R. Koenitzer, Deepesh Kumar Gupta, Wang Kyaw Twan, Huihui Xu, Nicholas Hadas, Finn J. Hawkins, Mary Lou Beermann, Gervette M. Penny, Nathan T. Wamsley, Andrew Berical, Michael B. Major, Susan K. Dutcher, Steven L. Brody, Amjad Horani
Jeffrey R. Koenitzer, Deepesh Kumar Gupta, Wang Kyaw Twan, Huihui Xu, Nicholas Hadas, Finn J. Hawkins, Mary Lou Beermann, Gervette M. Penny, Nathan T. Wamsley, Andrew Berical, Michael B. Major, Susan K. Dutcher, Steven L. Brody, Amjad Horani
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Research Article Cell biology Pulmonology

Transcriptional analysis of primary ciliary dyskinesia airway cells reveals a dedicated cilia glutathione pathway

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Abstract

Primary ciliary dyskinesia (PCD) is a genetic condition that results in dysmotile cilia. The repercussions of cilia dysmotility and gene variants on the multiciliated cell remain poorly understood. We used single-cell RNA-Seq, proteomics, and advanced microscopy to compare primary culture epithelial cells from patients with PCD, their heterozygous mothers, and healthy individuals, and we induced pluripotent stem cells (iPScs) generated from a patient with PCD. Transcriptomic analysis revealed unique signatures in PCD airway cells compared with their mothers’ cells and the cells of healthy individuals. Gene expression in heterozygous mothers’ cells diverged from both control and PCD cells, marked by increased inflammatory and cellular stress signatures. Primary and iPS-derived PCD multiciliated cells had increased expression of glutathione-S-transferases GSTA2 and GSTA1, as well as NRF2 target genes, accompanied by elevated levels of reactive oxygen species (ROS). Immunogold labeling in human cilia and proteomic analysis of the ciliated organism Chlamydomonas reinhardtii demonstrated that GSTA2 localizes to motile cilia. Loss of human GSTA2 and C. reinhardtii GSTA resulted in slowed cilia motility, pointing to local cilia regulatory roles. Our findings identify cellular responses unique to PCD variants and independent of environmental stress and uncover a dedicated ciliary GSTA2 pathway essential for normal motility that may be a therapeutic target.

Authors

Jeffrey R. Koenitzer, Deepesh Kumar Gupta, Wang Kyaw Twan, Huihui Xu, Nicholas Hadas, Finn J. Hawkins, Mary Lou Beermann, Gervette M. Penny, Nathan T. Wamsley, Andrew Berical, Michael B. Major, Susan K. Dutcher, Steven L. Brody, Amjad Horani

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Figure 5

Expression of GSTA2 and NRF2 markers in native and DNAH5 iPScs.

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Expression of GSTA2 and NRF2 markers in native and DNAH5 iPScs.
(A) UMAP...
(A) UMAPs comparing cell distribution between control iPS and DNAH5 iPScs showing no differences in cell subclusters between groups. Different colors represent different cell types. (1 donor, n = 3 technical replicates combined). (B) Pathway analysis of differentially expressed genes comparing nasal PCD cells and iPS PCD cells generated from the same patient with PCD. Diagram shows unique pathways upregulated in iPS PCD cells compared with control iPS cells, those upregulated in the nasal PCD cells compared with control nasal cells, and pathways that are shared between the iPS PCD cells and the nasal PCD cells (n = 1 donor for iPS PCD cells, n = 1 donor for control iPS cells, n = 1 donor for nasal PCD cells, n = 5 control nasal cells. Each in n = 3 technical replicates combined). (C) Violin plots showing the differential gene expression of select NRF2 pathway genes shared between multiciliated cells originating from induced pluripotent cells and native nasal PCD cells.

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