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Transcriptional analysis of primary ciliary dyskinesia airway cells reveals a dedicated cilia glutathione pathway
Jeffrey R. Koenitzer, Deepesh Kumar Gupta, Wang Kyaw Twan, Huihui Xu, Nicholas Hadas, Finn J. Hawkins, Mary Lou Beermann, Gervette M. Penny, Nathan T. Wamsley, Andrew Berical, Michael B. Major, Susan K. Dutcher, Steven L. Brody, Amjad Horani
Jeffrey R. Koenitzer, Deepesh Kumar Gupta, Wang Kyaw Twan, Huihui Xu, Nicholas Hadas, Finn J. Hawkins, Mary Lou Beermann, Gervette M. Penny, Nathan T. Wamsley, Andrew Berical, Michael B. Major, Susan K. Dutcher, Steven L. Brody, Amjad Horani
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Research Article Cell biology Pulmonology

Transcriptional analysis of primary ciliary dyskinesia airway cells reveals a dedicated cilia glutathione pathway

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Abstract

Primary ciliary dyskinesia (PCD) is a genetic condition that results in dysmotile cilia. The repercussions of cilia dysmotility and gene variants on the multiciliated cell remain poorly understood. We used single-cell RNA-Seq, proteomics, and advanced microscopy to compare primary culture epithelial cells from patients with PCD, their heterozygous mothers, and healthy individuals, and we induced pluripotent stem cells (iPScs) generated from a patient with PCD. Transcriptomic analysis revealed unique signatures in PCD airway cells compared with their mothers’ cells and the cells of healthy individuals. Gene expression in heterozygous mothers’ cells diverged from both control and PCD cells, marked by increased inflammatory and cellular stress signatures. Primary and iPS-derived PCD multiciliated cells had increased expression of glutathione-S-transferases GSTA2 and GSTA1, as well as NRF2 target genes, accompanied by elevated levels of reactive oxygen species (ROS). Immunogold labeling in human cilia and proteomic analysis of the ciliated organism Chlamydomonas reinhardtii demonstrated that GSTA2 localizes to motile cilia. Loss of human GSTA2 and C. reinhardtii GSTA resulted in slowed cilia motility, pointing to local cilia regulatory roles. Our findings identify cellular responses unique to PCD variants and independent of environmental stress and uncover a dedicated ciliary GSTA2 pathway essential for normal motility that may be a therapeutic target.

Authors

Jeffrey R. Koenitzer, Deepesh Kumar Gupta, Wang Kyaw Twan, Huihui Xu, Nicholas Hadas, Finn J. Hawkins, Mary Lou Beermann, Gervette M. Penny, Nathan T. Wamsley, Andrew Berical, Michael B. Major, Susan K. Dutcher, Steven L. Brody, Amjad Horani

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Figure 1

Primary airway cell clustering.

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Primary airway cell clustering.
(A) Schematic of showing nasal cell brus...
(A) Schematic of showing nasal cell brush biopsy, culture, and analysis. (B) UMAP for dimension reduction of cultured nasal cells showing unsupervised cell clustering and distribution of basal (Bas), secretory (Sec), multiciliated (Cil), dividing (Div), and ionocytes (Ion) (n = 5 samples, approximately 7,000 cells/sample). Colors represent different subclusters. (C) Heatmap of identified cell clusters shown in the UMAP, showing top expressed genes per cell subcluster. Unique transcriptional signatures differentiated the different subclusters. (D) UMAPs comparing cell distribution between normal control cells, heterozygous DNAH5 mothers, and homozygous DNAH5 patients’ cells show no differences in cell subclusters between groups (n = 5 for normal cells, n = 4 for heterozygous, and n = 4 PCD cells). (E) Cell numbers of the major cell types comparing the different experimental groups. (F) Dotplot comparing the different cell subclusters of each submitted sample between the indicated experimental groups.

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ISSN 2379-3708

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