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Functional and structural investigation of a broadly neutralizing SARS-CoV-2 antibody
Yi-Hsuan Chang, Min-Feng Hsu, Wei-Nan Chen, Min-Hao Wu, Wye-Lup Kong, Mei-Yeh Jade Lu, Chih-Heng Huang, Fang-Ju Chang, Lan-Yi Chang, Ho-Yang Tsai, Chao-Ping Tung, Jou-Hui Yu, Yali Kuo, Yu-Chi Chou, Li-Yang Bai, Yuan-Chih Chang, An-Yu Chen, Cheng-Cheung Chen, Yi-Hua Chen, Chun-Che Liao, Chih-Shin Chang, Jian-Jong Liang, Yi-Ling Lin, Takashi Angata, Shang-Te Danny Hsu, Kuo-I Lin
Yi-Hsuan Chang, Min-Feng Hsu, Wei-Nan Chen, Min-Hao Wu, Wye-Lup Kong, Mei-Yeh Jade Lu, Chih-Heng Huang, Fang-Ju Chang, Lan-Yi Chang, Ho-Yang Tsai, Chao-Ping Tung, Jou-Hui Yu, Yali Kuo, Yu-Chi Chou, Li-Yang Bai, Yuan-Chih Chang, An-Yu Chen, Cheng-Cheung Chen, Yi-Hua Chen, Chun-Che Liao, Chih-Shin Chang, Jian-Jong Liang, Yi-Ling Lin, Takashi Angata, Shang-Te Danny Hsu, Kuo-I Lin
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Research Article COVID-19 Infectious disease

Functional and structural investigation of a broadly neutralizing SARS-CoV-2 antibody

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Abstract

Since its emergence, SARS-CoV-2 has been continuously evolving, hampering the effectiveness of current vaccines against COVID-19. mAbs can be used to treat patients at risk of severe COVID-19. Thus, the development of broadly protective mAbs and an understanding of the underlying protective mechanisms are of great importance. Here, we isolated mAbs from donors with breakthrough infection with Omicron subvariants using a single–B cell screening platform. We identified a mAb, O5C2, which possesses broad-spectrum neutralization and antibody-dependent cell-mediated cytotoxic activities against SARS-CoV-2 variants, including EG.5.1. Single-particle analysis by cryo-electron microscopy revealed that O5C2 targeted an unusually large epitope within the receptor-binding domain of spike protein that overlapped with the angiotensin-converting enzyme 2 binding interface. Furthermore, O5C2 effectively protected against BA.5 Omicron infection in vivo by mediating changes in transcriptomes enriched in genes involved in apoptosis and interferon responses. Our findings provide insights into the development of pan-protective mAbs against SARS-CoV-2.

Authors

Yi-Hsuan Chang, Min-Feng Hsu, Wei-Nan Chen, Min-Hao Wu, Wye-Lup Kong, Mei-Yeh Jade Lu, Chih-Heng Huang, Fang-Ju Chang, Lan-Yi Chang, Ho-Yang Tsai, Chao-Ping Tung, Jou-Hui Yu, Yali Kuo, Yu-Chi Chou, Li-Yang Bai, Yuan-Chih Chang, An-Yu Chen, Cheng-Cheung Chen, Yi-Hua Chen, Chun-Che Liao, Chih-Shin Chang, Jian-Jong Liang, Yi-Ling Lin, Takashi Angata, Shang-Te Danny Hsu, Kuo-I Lin

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Figure 5

O5C2 possesses pan-neutralizing and broad ADCC activity against SARS-CoV-2 in culture.

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O5C2 possesses pan-neutralizing and broad ADCC activity against SARS-CoV...
(A) The activity of O5C2 to neutralize the infection of various indicated SARS-CoV-2 pseudotyped viruses. IC50 of O5C2 against each variant of SARS-CoV-2 is indicated at the bottom. (B) PRNT showing O5C2 effectively neutralizes the infection by the indicated authentic SARS-CoV-2 variants. The concentration of O5C2 used in each well is shown. (C) Calculation of the PRNT50 of O5C2 against authentic SARS-CoV-2 in B is indicated. (D) CC50 of O5C2 to kill the BA.4/5 (left) and XBB.1.16 (right) S-293T cells by NK-92 MI-FcR cells is shown. (E) A heatmap showing the results of competitive ELISA. Color shows the absorbance at 450 nm based on using the indicated HRP-conjugated mAbs (x axis) to compete with an unlabeled mAb (10 μg/mL, y axis). (F) CC50 of O5C2 together with another indicated mAb with ADCC activity to kill the BA.4/5 S-293T cells by NK-92 MI-FcR cells. Data in F were analyzed by a standard 1-way ANOVA test with Tukey’s multiple comparisons to compare each treatment. Results in A, C, and F are the mean ± SEM, while results in D are the mean ± SD (*P < 0.05, **P < 0.01, ***P < 0.001).

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