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The STAT3/SETDB2 axis dictates NF-κB–mediated inflammation in macrophages during wound repair
Kevin D. Mangum, Aaron denDekker, Qinmengge Li, Lam C. Tsoi, Amrita D. Joshi, William J. Melvin, Sonya J. Wolf, Jadie Y. Moon, Christopher O. Audu, James Shadiow, Andrea T. Obi, Rachael Wasikowski, Emily C. Barrett, Tyler M. Bauer, Kylie Boyer, Zara Ahmed, Frank M. Davis, Johann Gudjonsson, Katherine A. Gallagher
Kevin D. Mangum, Aaron denDekker, Qinmengge Li, Lam C. Tsoi, Amrita D. Joshi, William J. Melvin, Sonya J. Wolf, Jadie Y. Moon, Christopher O. Audu, James Shadiow, Andrea T. Obi, Rachael Wasikowski, Emily C. Barrett, Tyler M. Bauer, Kylie Boyer, Zara Ahmed, Frank M. Davis, Johann Gudjonsson, Katherine A. Gallagher
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Research Article Inflammation

The STAT3/SETDB2 axis dictates NF-κB–mediated inflammation in macrophages during wound repair

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Abstract

Macrophage transition from an inflammatory to reparative phenotype after tissue injury is controlled by epigenetic enzymes that regulate inflammatory gene expression. We have previously identified that the histone methyltransferase SETDB2 in macrophages drives tissue repair by repressing NF-κB–mediated inflammation. Complementary ATAC-Seq and RNA-Seq of wound macrophages isolated from mice deficient in SETDB2 in myeloid cells revealed that SETDB2 suppresses the inflammatory gene program by inhibiting chromatin accessibility at NF-κB–dependent gene promoters. We found that STAT3 was required for SETDB2 expression in macrophages, yet paradoxically, it also functioned as a binding partner of SETDB2 where it repressed SETDB2 activity by inhibiting its interaction with the NF-κB component, RELA, leading to increased RELA/NF-κB–mediated inflammatory gene expression. Furthermore, RNA-Seq in wound macrophages from STAT3-deficient mice corroborated this and revealed STAT3 and SETDB2 transcriptionally coregulate overlapping genes. Finally, in diabetic wound macrophages, STAT3 expression and STAT3/SETDB2 binding were increased. We have identified what we believe to be a novel STAT3/SETDB2 axis that modulates macrophage phenotype during tissue repair and may be an important therapeutic target for nonhealing diabetic wounds.

Authors

Kevin D. Mangum, Aaron denDekker, Qinmengge Li, Lam C. Tsoi, Amrita D. Joshi, William J. Melvin, Sonya J. Wolf, Jadie Y. Moon, Christopher O. Audu, James Shadiow, Andrea T. Obi, Rachael Wasikowski, Emily C. Barrett, Tyler M. Bauer, Kylie Boyer, Zara Ahmed, Frank M. Davis, Johann Gudjonsson, Katherine A. Gallagher

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Figure 2

STAT3 is dynamic during wound repair and regulates SETDB2 in human and murine wound macrophages.

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STAT3 is dynamic during wound repair and regulates SETDB2 in human and m...
(A) Gene structure of the human SETDB2 gene showing cloned fragment aligned with multiple active transcriptional features including DHS peaks, H3K27Ac, H3K4me3, and sequence conservation. (B) Dot plot of different STAT members expression from scRNA-Seq data of human wounds (n = 10 patients). (C) Scatterplot of SETDB2 and STAT3 expression in macrophages obtained from scRNA-Seq in human wounds with respective Pearson correlation analysis (n = 10 patients). (D) ChIP-qPCR for Stat3 binding at the mouse Setdb2 promoter compared with IgG negative control. (E) Luciferase activity of the 3 kb human SETDB2 promoter cloned into pGL3 and then transfected in BMDMs untreated or treated with IFN-β (10 U/mL; 8.5 ng/mL), or IFN-β plus tofacitinib (100 μM) for 4 hours. (F) qPCR analysis of Setdb2 expression in wound macrophages (CD3–CD19–NK1.1–Ly6G–CD11b+) isolated from Stat3fl/fl Lyz2Cre mice on day 5 after wounding compared with Cre– littermate control (n = 6 mice per group). (G) Setdb2 expression in BMDMs treated with IFN-β or IFN-β plus tofacitinib (n = 6–8 mice per group). (H) Representative Western blot and densitometry of murine whole wounds showing decreased levels of STAT3 at day 5 compared with day 0 after wounding (n = 3–4 mice at each time point). (I) Wound curve analysis in Stat3fl/fl Lyz2Cre mice compared with Cre– littermate controls all fed a normal diet (n = 8–12 mice per group in each experiment). All data are representative of n = 3–5 independent experiments. *P < 0.05, **P < 0.01, ****P < 0.0001. Data are presented as the mean ± SEM. Two-tailed Student’s t test was used for comparison of 2 groups. For comparison among multiple groups, 2-way ANOVA followed by Newman-Keuls post hoc test was used.

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