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Shared roles of immune and stromal cells in the pathogenesis of human bronchiolitis obliterans syndrome
Patrick W. Mellors, Ana N. Lange, Bruno Casino Remondo, Maksim Shestov, Joseph D. Planer, Andrew R. Peterson, Yun Ying, Su Zhou, Jason D. Christie, Joshua M. Diamond, Edward Cantu, Maria C. Basil, Saar Gill
Patrick W. Mellors, Ana N. Lange, Bruno Casino Remondo, Maksim Shestov, Joseph D. Planer, Andrew R. Peterson, Yun Ying, Su Zhou, Jason D. Christie, Joshua M. Diamond, Edward Cantu, Maria C. Basil, Saar Gill
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Research Article Hematology Immunology Pulmonology

Shared roles of immune and stromal cells in the pathogenesis of human bronchiolitis obliterans syndrome

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Abstract

Bronchiolitis obliterans syndrome (BOS) is a progressive, fatal obstructive lung disease that occurs following lung transplant, where it is termed chronic lung allograft dysfunction BOS (CLAD-BOS), or as the primary manifestation of pulmonary chronic graft versus host disease (cGVHD-BOS) following allogeneic hematopoietic stem cell transplant. Disease pathogenesis is poorly understood; however, chronic alloreactivity is common to both conditions, suggesting a shared pathophysiology. We performed single-cell RNA-Seq (scRNA-Seq) on explanted human lungs from 4 patients with CLAD-BOS, 3 patients with cGVHD-BOS, and 3 deceased controls to identify cell types, genes, and pathways enriched in BOS to better understand disease mechanisms. In both forms of BOS, we found an expanded population of CD8+ tissue resident memory T cells (TRM), which was distinct to BOS compared with other chronic lung diseases. In addition, BOS samples expressed genes and pathways associated with macrophage chemotaxis and proliferation, including in nonimmune cell populations. We also identified dysfunctional stromal cells in BOS, characterized by pro- and antifibrotic gene programs. These data suggest substantial cellular and molecular overlap between CLAD- and cGVHD-BOS and, therefore, common pathways for possible therapeutic intervention.

Authors

Patrick W. Mellors, Ana N. Lange, Bruno Casino Remondo, Maksim Shestov, Joseph D. Planer, Andrew R. Peterson, Yun Ying, Su Zhou, Jason D. Christie, Joshua M. Diamond, Edward Cantu, Maria C. Basil, Saar Gill

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Figure 4

CLAD-BOS is enriched for genes, pathways, and cell-cell interactions promoting macrophage migration, adhesion, and proliferation.

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CLAD-BOS is enriched for genes, pathways, and cell-cell interactions pro...
(A) Volcano plot illustrating differential expression of genes encoding (a) damage-associated molecular patterns (DAMPs), (b) colony stimulating factor, (c) chemokines, and (d) leukocyte adhesion proteins in alveolar macrophages in CLAD-BOS compared with NC lungs. Differences in gene expression were quantified using log2 fold change, and statistically significant differences were identified using the Wilcoxon rank sum test and a Bonferroni-corrected P < 0.05. (B) Dot plot with enrichment of gene ontology (GO) terms related to migration, adhesion, and cytokine response in alveolar macrophages in CLAD-BOS compared with NC. P values for normalized enrichment score (NES) were calculated using permutation testing and adjusted for multiple comparisons using the Benjamini-Hochberg method. (C) Feature plot illustrating CXCL8 expression in CD45– cell subsets in CLAD-BOS compared with NC. (D) Circle plot illustrating putative CSF1 signaling from endothelial (CAP1, CAP2, AEC, VEC) and stromal cells (AF2) to macrophage subsets in CLAD-BOS versus NC. All interactions depicted are statistically significant using a 1-sided permutation test with significance threshold of P < 0.05, and thicker lines indicate stronger interactions.

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