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Injury-induced Foxm1 expression in the mouse kidney drives epithelial proliferation by a cyclin F–dependent mechanism
Megan L. Noonan, Yoshiharu Muto, Yasuhiro Yoshimura, Aidan Leckie-Harre, Haojia Wu, Vladimir V. Kalinichenko, Benjamin D. Humphreys, Monica Chang-Panesso
Megan L. Noonan, Yoshiharu Muto, Yasuhiro Yoshimura, Aidan Leckie-Harre, Haojia Wu, Vladimir V. Kalinichenko, Benjamin D. Humphreys, Monica Chang-Panesso
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Research Article Cell biology Nephrology

Injury-induced Foxm1 expression in the mouse kidney drives epithelial proliferation by a cyclin F–dependent mechanism

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Abstract

Acute kidney injury (AKI) strongly upregulates the transcription factor Foxm1 in the proximal tubule in vivo, and Foxm1 drives epithelial proliferation in vitro. Here, we report that deletion of Foxm1 either with a nephron-specific Cre driver or by inducible global deletion reduced proximal tubule proliferation after ischemic injury in vivo. Foxm1 deletion led to increased AKI to chronic kidney disease transition, with enhanced fibrosis and ongoing tubule injury 6 weeks after injury. We report ERK mediated FOXM1 induction downstream of the EGFR in primary proximal tubule cells. We defined FOXM1 genomic binding sites by cleavage under targets and release using nuclease (CUT&RUN) and compared the genes located near FOXM1 binding sites with genes downregulated in primary proximal tubule cells after FOXM1 knockdown. The aligned data sets revealed the cell cycle regulator cyclin F (CCNF) as a putative FOXM1 target. We identified 2 cis regulatory elements that bound FOXM1 and regulated CCNF expression, demonstrating that Ccnf is strongly induced after kidney injury and that Foxm1 deletion abrogates Ccnf expression in vivo and in vitro. Knockdown of CCNF also reduced proximal tubule proliferation in vitro. These studies identify an ERK/FOXM1/CCNF signaling pathway that regulates injury-induced proximal tubule cell proliferation.

Authors

Megan L. Noonan, Yoshiharu Muto, Yasuhiro Yoshimura, Aidan Leckie-Harre, Haojia Wu, Vladimir V. Kalinichenko, Benjamin D. Humphreys, Monica Chang-Panesso

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Figure 4

Identifying downstream targets of FOXM1.

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Identifying downstream targets of FOXM1.
(A) CUT&RUN for FOXM1 was p...
(A) CUT&RUN for FOXM1 was performed on hRPTECs. (B) Genomic distribution of FOXM1 CUT&RUN peaks. (C) Gene ontology analysis of the binding peaks identified. (D) qPCR showing FOXM1, PLK1, and PCNA mRNA expression after FOXM1 siRNA treatment of hRPTECs. (E) Bulk RNA-Seq was performed on lysates from FOXM1 siRNA and control siRNA-transfected hRPTECs. (F) Heatmap showing the top 25 upregulated genes and downregulated genes from the DEG list by comparing FOXM1 siRNA–treated hRPTECs vs. control. (G) Gene ontology analysis of the DEG list after FOXM1 siRNA treatment in hRPTECs. (H) Genes that overlapped in the FOXM1 CUT&RUN and FOXM1 bulk RNA-Seq data sets. Genes highlighted have not been reported to be associated with FOXM1. **P < 0.01, ***P < 0.001, ****P < 0.0001 by 2-tailed Student’s t test.

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