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Targeting CEBPA to restore cellular identity and tissue homeostasis in pulmonary fibrosis
Qi Tan, Jack H. Wellmerling, Shengren Song, Sara R. Dresler, Jeffrey A. Meridew, Kyoung M. Choi, Yong Li, Y.S. Prakash, Daniel J. Tschumperlin
Qi Tan, Jack H. Wellmerling, Shengren Song, Sara R. Dresler, Jeffrey A. Meridew, Kyoung M. Choi, Yong Li, Y.S. Prakash, Daniel J. Tschumperlin
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Research Article Pulmonology Stem cells

Targeting CEBPA to restore cellular identity and tissue homeostasis in pulmonary fibrosis

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Abstract

Fibrosis in the lung is thought to be driven by epithelial cell dysfunction and aberrant cell-cell interactions. Unveiling the molecular mechanisms of cellular plasticity and cell-cell interactions is imperative to elucidating lung regenerative capacity and aberrant repair in pulmonary fibrosis. By mining publicly available RNA-Seq data sets, we identified loss of CCAAT enhancer-binding protein alpha (CEBPA) as a candidate contributor to idiopathic pulmonary fibrosis (IPF). We used conditional KO mice, scRNA-Seq, lung organoids, small-molecule inhibition, and potentially novel gene manipulation methods to investigate the role of CEBPA in lung fibrosis and repair. Long-term (6 months or more) of Cebpa loss in AT2 cells caused spontaneous fibrosis and increased susceptibility to bleomycin-induced fibrosis. Cebpa knockout (KO) in these mice significantly decreased AT2 cell numbers in the lung and reduced expression of surfactant homeostasis genes, while increasing inflammatory cell recruitment as well as upregulating S100a8/a9 in AT2 cells. In vivo treatment with an S100A8/A9 inhibitor alleviated experimental lung fibrosis. Restoring CEBPA expression in lung organoids ex vivo and during experimental lung fibrosis in vivo rescued CEBPA deficiency–mediated phenotypes. Our study establishes a direct mechanistic link between CEBPA repression, impaired AT2 cell identity, disrupted tissue homeostasis, and lung fibrosis.

Authors

Qi Tan, Jack H. Wellmerling, Shengren Song, Sara R. Dresler, Jeffrey A. Meridew, Kyoung M. Choi, Yong Li, Y.S. Prakash, Daniel J. Tschumperlin

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Figure 5

S100A8/9 inhibitor paquinimod alleviates experimental lung fibrosis.

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S100A8/9 inhibitor paquinimod alleviates experimental lung fibrosis.
(A)...
(A) Schematic showing timeline of paquinimod treatment, which inhibits the inflammatory S100A8/9 proteins, in the CebpaΔSftpc mouse model of fibrosis. (B) Weight of mice treated with paquinimod (n = 10) or corn oil (n = 9), as depicted in A. (C) Survival curve for mice from B. (D) Flow cytometry analysis performed 21 days after bleomycin injury, showing eosinophils and neutrophils from the lungs of mice treated with paquinimod (n = 3) or corn oil (n = 3). (E) Representative H&E staining images showing lung sections taken 21 days after bleomycin injury from mice treated with paquinimod (n = 3) or corn oil (n = 3). (F) Hydroxyproline assay performed 21 days after bleomycin injury in lung samples from mice in E. (G) qPCR performed 21 days after bleomycin injury for profibrotic gene transcripts in mice treated with paquinimod (n = 5) or corn oil (n = 5). (H) Representative immunostaining images of Sftpc expression from the lungs of mice harvested 21 days after bleomycin injury and after treatment with paquinimod (n = 3) or corn oil (n = 3). (I) qPCR for Sftpc expression performed 21 days after bleomycin injury in mice from H. Data were analyzed using a Mann–Whitney U test. *P < 0.05, **P < 0.01, ***P < 0.001.

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