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Targeting CEBPA to restore cellular identity and tissue homeostasis in pulmonary fibrosis
Qi Tan, Jack H. Wellmerling, Shengren Song, Sara R. Dresler, Jeffrey A. Meridew, Kyoung M. Choi, Yong Li, Y.S. Prakash, Daniel J. Tschumperlin
Qi Tan, Jack H. Wellmerling, Shengren Song, Sara R. Dresler, Jeffrey A. Meridew, Kyoung M. Choi, Yong Li, Y.S. Prakash, Daniel J. Tschumperlin
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Research Article Pulmonology Stem cells

Targeting CEBPA to restore cellular identity and tissue homeostasis in pulmonary fibrosis

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Abstract

Fibrosis in the lung is thought to be driven by epithelial cell dysfunction and aberrant cell-cell interactions. Unveiling the molecular mechanisms of cellular plasticity and cell-cell interactions is imperative to elucidating lung regenerative capacity and aberrant repair in pulmonary fibrosis. By mining publicly available RNA-Seq data sets, we identified loss of CCAAT enhancer-binding protein alpha (CEBPA) as a candidate contributor to idiopathic pulmonary fibrosis (IPF). We used conditional KO mice, scRNA-Seq, lung organoids, small-molecule inhibition, and potentially novel gene manipulation methods to investigate the role of CEBPA in lung fibrosis and repair. Long-term (6 months or more) of Cebpa loss in AT2 cells caused spontaneous fibrosis and increased susceptibility to bleomycin-induced fibrosis. Cebpa knockout (KO) in these mice significantly decreased AT2 cell numbers in the lung and reduced expression of surfactant homeostasis genes, while increasing inflammatory cell recruitment as well as upregulating S100a8/a9 in AT2 cells. In vivo treatment with an S100A8/A9 inhibitor alleviated experimental lung fibrosis. Restoring CEBPA expression in lung organoids ex vivo and during experimental lung fibrosis in vivo rescued CEBPA deficiency–mediated phenotypes. Our study establishes a direct mechanistic link between CEBPA repression, impaired AT2 cell identity, disrupted tissue homeostasis, and lung fibrosis.

Authors

Qi Tan, Jack H. Wellmerling, Shengren Song, Sara R. Dresler, Jeffrey A. Meridew, Kyoung M. Choi, Yong Li, Y.S. Prakash, Daniel J. Tschumperlin

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Figure 4

Loss of Cebpa induces loss of AT2 cell identity.

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Loss of Cebpa induces loss of AT2 cell identity.
(A) Representative imag...
(A) Representative images of immunostaining of Sftpc, a surfactant and marker of AT2 cells, in lung samples taken from CebpaΔSftpc (n = 5) and Cebpafl/fl (n = 5) mice. Scale bar: 20 μM. (B) Quantification of Sftpc+ cells as a percentage of total cells from CebpaΔSftpc (n = 5) and Cebpafl/fl (n = 5) mice. (C) qPCR for Sftpc transcripts from CebpaΔSftpc (n = 4) and Cebpafl/fl mice (n = 4). (D) Representative transmission electron microscopy images showing lamellar bodies, a defining feature of AT2 cells, in lung samples from CebpaΔSftpc (n = 4) and Cebpafl/fl (n = 4) mice. Scale bar: 5 μM. (E) Representative bright-field images of lung organoid formation from samples taken from CebpaΔSftpc (n = 4) and Cebpafl/fl (n = 4) mice. Scale bar: 200 μM. (F) Quantification of organoid formation from CebpaΔSftpc and Cebpafl/fl mice in E. (G) Representative immunostaining images showing Sftpc expression in the lung organoids from CebpaΔSftpc and Cebpafl/fl mice. Scale bar: 50 μM. (H) Representative immunofluorescence images showing LysoTracker uptake in lung organoids from CebpaΔSftpc and Cebpafl/fl mice. Organoids were stained with LysoTracker, which selectively accumulates in lamellar bodies in AT2 cells. Scale bar: 50 μM. (I) Quantification of LysoTracker uptake (i.e., GFP intensity) from H. (J–L) Representative immunostaining images of Cebpa, Sftpc, and Abca3 in lung samples from tdTomato Sftpc Cre lineage-tracing mice with Cebpafi+/fl+ (n = 3) and Cebpafl–/fl– (n = 3) mice. Each protein of interest fluoresces white, while lineage-tracing tdTomato cells fluoresce red. Scale bar: 50 μm. Data were analyzed using a Mann–Whitney U test. *P < 0.05, **P < 0.01.

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