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Altered lipid homeostasis is associated with cerebellar neurodegeneration in SNX14 deficiency
Yijing Zhou, Vanessa B. Sanchez, Peining Xu, Thomas Roule, Marco Flores-Mendez, Brianna Ciesielski, Donna Yoo, Hiab Teshome, Teresa Jimenez, Shibo Liu, Mike Henne, Tim O’Brien, Ye He, Clementina Mesaros, Naiara Akizu
Yijing Zhou, Vanessa B. Sanchez, Peining Xu, Thomas Roule, Marco Flores-Mendez, Brianna Ciesielski, Donna Yoo, Hiab Teshome, Teresa Jimenez, Shibo Liu, Mike Henne, Tim O’Brien, Ye He, Clementina Mesaros, Naiara Akizu
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Research Article Neuroscience

Altered lipid homeostasis is associated with cerebellar neurodegeneration in SNX14 deficiency

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Abstract

Dysregulated lipid homeostasis is emerging as a potential cause of neurodegenerative disorders. However, evidence of errors in lipid homeostasis as a pathogenic mechanism of neurodegeneration remains limited. Here, we show that cerebellar neurodegeneration caused by Sorting Nexin 14 (SNX14) deficiency is associated with lipid homeostasis defects. Recent studies indicate that SNX14 is an interorganelle lipid transfer protein that regulates lipid transport, lipid droplet (LD) biogenesis, and fatty acid desaturation, suggesting that human SNX14 deficiency belongs to an expanding class of cerebellar neurodegenerative disorders caused by altered cellular lipid homeostasis. To test this hypothesis, we generated a mouse model that recapitulates human SNX14 deficiency at a genetic and phenotypic level. We demonstrate that cerebellar Purkinje cells (PCs) are selectively vulnerable to SNX14 deficiency while forebrain regions preserve their neuronal content. Ultrastructure and lipidomic studies reveal widespread lipid storage and metabolism defects in SNX14-deficient mice. However, predegenerating SNX14-deficient cerebella show a unique accumulation of acylcarnitines and depletion of triglycerides. Furthermore, defects in LD content and telolysosome enlargement in predegenerating PCs suggest lipotoxicity as a pathogenic mechanism of SNX14 deficiency. Our work shows a selective cerebellar vulnerability to altered lipid homeostasis and provides a mouse model for future therapeutic studies.

Authors

Yijing Zhou, Vanessa B. Sanchez, Peining Xu, Thomas Roule, Marco Flores-Mendez, Brianna Ciesielski, Donna Yoo, Hiab Teshome, Teresa Jimenez, Shibo Liu, Mike Henne, Tim O’Brien, Ye He, Clementina Mesaros, Naiara Akizu

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Figure 4

Genes involved in lipid response are differentially expressed in SNX14-deficient cerebella.

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Genes involved in lipid response are differentially expressed in SNX14-d...
(A and B) Volcano plots of differentially expressed genes (DEGs) in the cortex and cerebellum of WT versus KO mice at 1 month and 1 year. Dashed lines indicate statistical siginficance cut off (–log10[Padj] > 1.301 and log2[FC] = ± 0.5). Number of siginficantly down- and upregulated genes are displayed on the top of each plot in blue and red, respectively. (C and D) Dot plots of gene ontology (GO) enrichment analysis of the DEGs, with selected down- and upregulated GO categories marked in blue and red, respectively. Dot size indicates proportion of DEGs relative to the total number of genes in each category. (E) Waterfall plots of Gene Set Enrichment Analysis (GSEA) of cerebellum-specific siginficant gene ontology terms. Terms in orange, magenta, and black are related to lipid, oxygen, and iron, respectively. (F) Heatmap of the top 20 leading edge genes of each term displayed in the 1-month cerebellum GSEA shown in E. (G) Heatmap of the top 10 leading edge genes of each term displayed in the 1-year Cerebellum GSEA shown in E.

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