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H2Bub1 loss is an early contributor to clear cell ovarian cancer progression
Adam J. Ferrari, Priyanka Rawat, Hannah S. Rendulich, Akshaya V. Annapragada, Yasuto Kinose, Xiaoming Zhang, Kyle Devins, Anna Budina, Robert B. Scharpf, Marilyn A. Mitchell, Janos L. Tanyi, Mark A. Morgan, Lauren E. Schwartz, T. Rinda Soong, Victor E. Velculescu, Ronny Drapkin
Adam J. Ferrari, Priyanka Rawat, Hannah S. Rendulich, Akshaya V. Annapragada, Yasuto Kinose, Xiaoming Zhang, Kyle Devins, Anna Budina, Robert B. Scharpf, Marilyn A. Mitchell, Janos L. Tanyi, Mark A. Morgan, Lauren E. Schwartz, T. Rinda Soong, Victor E. Velculescu, Ronny Drapkin
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Research Article Cell biology Oncology

H2Bub1 loss is an early contributor to clear cell ovarian cancer progression

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Abstract

Epigenetic aberrations, including posttranslational modifications of core histones, are major contributors to cancer. Here, we define the status of histone H2B monoubiquitylation (H2Bub1) in clear cell ovarian carcinoma (CCOC), low-grade serous carcinoma, and endometrioid carcinomas. We report that clear cell carcinomas exhibited profound loss, with nearly all cases showing low or negative H2Bub1 expression. Moreover, we found that H2Bub1 loss occurred in endometriosis and atypical endometriosis, which are established precursors to CCOCs. To examine whether dysregulation of a specific E3 ligase contributes to the loss of H2Bub1, we explored expression of ring finger protein 40 (RNF40), ARID1A, and UBR7 in the same case cohort. Loss of RNF40 was significantly and profoundly correlated with loss of H2Bub1. Using genome-wide DNA methylation profiles of 230 patients with CCOC, we identified hypermethylation of RNF40 in CCOC as a likely mechanism underlying the loss of H2Bub1. Finally, we demonstrated that H2Bub1 depletion promoted cell proliferation and clonogenicity in an endometriosis cell line. Collectively, our results indicate that H2Bub1 plays a tumor-suppressive role in CCOCs and that its loss contributes to disease progression.

Authors

Adam J. Ferrari, Priyanka Rawat, Hannah S. Rendulich, Akshaya V. Annapragada, Yasuto Kinose, Xiaoming Zhang, Kyle Devins, Anna Budina, Robert B. Scharpf, Marilyn A. Mitchell, Janos L. Tanyi, Mark A. Morgan, Lauren E. Schwartz, T. Rinda Soong, Victor E. Velculescu, Ronny Drapkin

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Figure 5

Mechanistic driver of H2Bub1 loss in CCOC.

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Mechanistic driver of H2Bub1 loss in CCOC.
(A–D) UCSC genome browser sch...
(A–D) UCSC genome browser schematic of the RNF40 gene encompassing chromogram, transcript, CpG islands, active enhancer marks (H3K27Ac), and transcription binding sites. (E) Heatmap showing β-values of RNF40 probes of methylation analysis for 230 CCOC patient samples; β-values of 0 depict hypomethylation and β-values of 1 signify hypermethylated probes. (F) Volcano plot comparing methylation status between benign endometrium and CCOC patient samples with an adjusted P value of less than 0.05 (horizontal dashed line) and Fisher’s FDR < 0.005. Hypermethylated probes are shown in pink, hypomethylated probes are shown by green, and RNF40 hypermethylated probes are highlighted in red with ID. Vertical dashed line represents –0.5 and 0.5 β-values. (G) Differentially methylated probes of the RNF40 locus in CCOC compared with endometriosis identified by blue star.

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