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Disruption of CFAP418 interaction with lipids causes widespread abnormal membrane-associated cellular processes in retinal degenerations
Anna M. Clark, Dongmei Yu, Grace Neiswanger, Daniel Zhu, Junhuang Zou, J. Alan Maschek, Thomas Burgoyne, Jun Yang
Anna M. Clark, Dongmei Yu, Grace Neiswanger, Daniel Zhu, Junhuang Zou, J. Alan Maschek, Thomas Burgoyne, Jun Yang
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Research Article Cell biology Ophthalmology

Disruption of CFAP418 interaction with lipids causes widespread abnormal membrane-associated cellular processes in retinal degenerations

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Abstract

Syndromic ciliopathies and retinal degenerations are large heterogeneous groups of genetic diseases. Pathogenic variants in the CFAP418 gene may cause both disorders, and its protein sequence is evolutionarily conserved. However, the disease mechanism underlying CFAP418 mutations has not been explored. Here, we apply quantitative lipidomic, proteomic, and phosphoproteomic profiling and affinity purification coupled with mass spectrometry to address the molecular function of CFAP418 in the retina. We show that CFAP418 protein binds to the lipid metabolism precursor phosphatidic acid (PA) and mitochondrion-specific lipid cardiolipin but does not form a tight and static complex with proteins. Loss of Cfap418 in mice disturbs membrane lipid homeostasis and membrane-protein associations, which subsequently causes mitochondrial defects and membrane-remodeling abnormalities across multiple vesicular trafficking pathways in photoreceptors, especially the endosomal sorting complexes required for transport (ESCRT) pathway. Ablation of Cfap418 also increases the activity of PA-binding protein kinase Cα in the retina. Overall, our results indicate that membrane lipid imbalance is a pathological mechanism underlying syndromic ciliopathies and retinal degenerations which is associated with other known causative genes of these diseases.

Authors

Anna M. Clark, Dongmei Yu, Grace Neiswanger, Daniel Zhu, Junhuang Zou, J. Alan Maschek, Thomas Burgoyne, Jun Yang

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Figure 5

Ciliary transport proteins are affected during Cfap418–/– OS growth.

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Ciliary transport proteins are affected during Cfap418–/– OS growth.
(A)...
(A) Proteins in ciliary transport pathways are reduced in P10 Cfap418–/– retinas. (B) Quantitative MS data show normal BBS2, BBS4, and undetectable ARL13B (not shown) protein expression in P5 Cfap418–/– (Ko) retinas and their reduced expression in P10 Cfap418–/– retinas. (C) Semiquantitative immunoblots for BBS2, BBS4, and ARL13B in Cfap418+/– and Cfap418–/– littermate retinas at different time points. The corresponding γ-tubulin immunoblots are loading controls. (D) Quantification of the semiquantitative immunoblots reveals BBS2 and ARL13B reductions in P10 and P14 Cfap418–/– retinas, respectively, and a trend of BBS4 reduction in P14 Cfap418–/– retinas. (E) Mislocalization of STX3 from the IS and OPL to the OS in P21 Cfap418–/– photoreceptors. Scale bars: 10 mm. Data from individual mice and mean ± SEM are shown in B and D (2-tailed Student’s t test). See complete unedited blots in the supplemental material.

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