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Metastatic pancreatic neuroendocrine tumors feature elevated T cell infiltration
Jacques Greenberg, Jessica Limberg, Akanksha Verma, David Kim, Xiang Chen, Yeon J. Lee, Maureen D. Moore, Timothy M. Ullmann, Jessica W. Thiesmeyer, Zachary Loewenstein, Kevin J. Chen, Caitlin E. Egan, Dessislava Stefanova, Rohan Bareja, Rasa Zarnegar, Brendan M. Finnerty, Theresa Scognamiglio, Yi-Chieh Nancy Du, Olivier Elemento, Thomas J. Fahey III, Irene M. Min
Jacques Greenberg, Jessica Limberg, Akanksha Verma, David Kim, Xiang Chen, Yeon J. Lee, Maureen D. Moore, Timothy M. Ullmann, Jessica W. Thiesmeyer, Zachary Loewenstein, Kevin J. Chen, Caitlin E. Egan, Dessislava Stefanova, Rohan Bareja, Rasa Zarnegar, Brendan M. Finnerty, Theresa Scognamiglio, Yi-Chieh Nancy Du, Olivier Elemento, Thomas J. Fahey III, Irene M. Min
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Research Article Immunology Therapeutics

Metastatic pancreatic neuroendocrine tumors feature elevated T cell infiltration

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Abstract

Pancreatic neuroendocrine tumors (PNETs) are malignancies arising from the islets of Langerhans. Therapeutic options are limited for the over 50% of patients who present with metastatic disease. We aimed to identify mechanisms to remodel the PNET tumor microenvironment (TME) to ultimately enhance susceptibility to immunotherapy. The TMEs of localized and metastatic PNETs were investigated using an approach that combines RNA-Seq, cancer and T cell profiling, and pharmacologic perturbations. RNA-Seq analysis indicated that the primary tumors of metastatic PNETs showed significant activation of inflammatory and immune-related pathways. We determined that metastatic PNETs featured increased numbers of tumor-infiltrating T cells compared with localized tumors. T cells isolated from both localized and metastatic PNETs showed evidence of recruitment and antigen-dependent activation, suggestive of an immune-permissive microenvironment. A computational analysis suggested that vorinostat, a histone deacetylase inhibitor, may perturb the transcriptomic signature of metastatic PNETs. Treatment of PNET cell lines with vorinostat increased chemokine CCR5 expression by NF-κB activation. Vorinostat treatment of patient-derived metastatic PNET tissues augmented recruitment of autologous T cells, and this augmentation was substantiated in a mouse model of PNET. Pharmacologic induction of chemokine expression may represent a promising approach for enhancing the immunogenicity of metastatic PNET TMEs.

Authors

Jacques Greenberg, Jessica Limberg, Akanksha Verma, David Kim, Xiang Chen, Yeon J. Lee, Maureen D. Moore, Timothy M. Ullmann, Jessica W. Thiesmeyer, Zachary Loewenstein, Kevin J. Chen, Caitlin E. Egan, Dessislava Stefanova, Rohan Bareja, Rasa Zarnegar, Brendan M. Finnerty, Theresa Scognamiglio, Yi-Chieh Nancy Du, Olivier Elemento, Thomas J. Fahey III, Irene M. Min

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Figure 5

PNET-infiltrating T cells exhibit antigen-experienced phenotype.

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PNET-infiltrating T cells exhibit antigen-experienced phenotype.
(A–F) P...
(A–F) PBMC analysis obtained from healthy volunteers and patients with localized and metastatic disease (n = 6 for healthy, n = 6 for localized, n = 4 for metastatic). (A and B) Representative flow cytometry and data plots of CD3+ T and CD19+ B cells in live PBMCs. (C and D) Flow cytometry plots and frequency analysis of CD4+ and CD8+ T cells gated on live CD3+ T cells. P value was determined by Mann-Whitney U test when comparing patients with all (localized and metastatic) disease to healthy controls. (E and F) Analysis of composition of peripheral CD56+ NK cells. (G) Flow cytometry plots of CD4+ and CD8+ T cells gated on live CD3+ T cells isolated from PNET tissues. (H) Summary data assessing percentages of gated CD4+ and CD8+ PNET-infiltrating T cells and analysis of CD4/CD8 ratio. Metastatic tumor tissues isolated from primary (p) and metastatic (m) sites were analyzed independently (n = 4 for localized, n = 3 for primary tumor of metastatic, n = 3 for metastatic site of metastatic PNET). (I) Representative flow cytometry plots of CD4+ T cells stained for CD69, CCR5, or PDCD1 expression. Gates were set by fluorescence minus 1 (MFO) control. Healthy donors and patients with localized (loc) or metastatic (met) tumors were indicated by numbers. T cells isolated from PBMCs (PB) and tumors (Tu) are marked on the right. Metastatic tumors isolated from metastatic (m) and primary (p) sites were analyzed separately. (J) Summary data of CD4+ T cell phenotypes. (K) Representative flow cytometry plots of CD8+ T cells analyzed for CD69, CCR5, or PD-1 expression. (L) Summary data of frequencies of T cell phenotypes. Kruskal-Wallis with Dunn’s multiple-comparison test was applied for 3 group comparisons (*P < 0.05; **P < 0.01). Data are shown as mean ± SEM.

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