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Low c-Kit expression identifies primitive, therapy-resistant CML stem cells
Mansi Shah, … , Robert S. Welner, Ravi Bhatia
Mansi Shah, … , Robert S. Welner, Ravi Bhatia
Published November 22, 2022
Citation Information: JCI Insight. 2023;8(1):e157421. https://doi.org/10.1172/jci.insight.157421.
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Research Article Hematology Oncology

Low c-Kit expression identifies primitive, therapy-resistant CML stem cells

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Abstract

Despite the efficacy of tyrosine kinase inhibitors (TKIs) in chronic myeloid leukemia (CML), malignant long-term hematopoietic stem cells (LT-HSCs) persist as a source of relapse. However, LT-HSCs are heterogenous and the most primitive, drug-resistant LT-HSC subpopulations are not well characterized. In normal hematopoiesis, self-renewal and long-term reconstitution capacity are enriched within LT-HSCs with low c-Kit expression (c-KITlo). Here, using a transgenic CML mouse model, we found that long-term engraftment and leukemogenic capacity were restricted to c-KITlo CML LT-HSCs. CML LT-HSCs demonstrated enhanced differentiation with expansion of mature progeny following exposure to the c-KIT ligand, stem cell factor (SCF). Conversely, SCF deletion led to depletion of normal LT-HSCs but increase in c-KITlo and total CML LT-HSCs with reduced generation of mature myeloid cells. CML c-KITlo LT-HSCs showed reduced cell cycling and expressed enhanced quiescence and inflammatory gene signatures. SCF administration led to enhanced depletion of CML primitive progenitors but not LT-HSCs after TKI treatment. Human CML LT-HSCs with low or absent c-KIT expression were markedly enriched after TKI treatment. We conclude that CML LT-HSCs expressing low c-KIT levels are enriched for primitive, quiescent, drug-resistant leukemia-initiating cells and represent a critical target for eliminating disease persistence.

Authors

Mansi Shah, Harish Kumar, Shaowei Qiu, Hui Li, Mason Harris, Jianbo He, Ajay Abraham, David K. Crossman, Andrew Paterson, Robert S. Welner, Ravi Bhatia

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Figure 2

CML c-KITlo LT-HSCs exhibit gene signatures characteristic of primitive, drug-resistant leukemia stem cells.

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CML c-KITlo LT-HSCs exhibit gene signatures characteristic of primitive,...
Volcano plots of differential expression of normal c-KITlo LT-HSCs versus normal c-KIThi LT-HSCs (A) and CML c-KITlo LT-HSCs versus CML c-KIThi LT-HSCs (n = 3 each) (B). Known HSC drivers and markers are indicated. Normalized enrichment scores (NES) of Hallmark gene sets significantly enriched (FDR < 0.05) in CML c-KITlo LT-HSCs compared with CML c-KIThi LT-HSCs (C). Protein-protein association network analysis of leading-edge genes from the inflammation related gene sets enriched in CML c-KITlo LT-HSCs compared with CML c-KIThi LT-HSCs was performed using STRING (D). NES of Hallmark gene sets significantly enriched (FDR < 0.05) in CML c-KITlo LT-HSCs compared with normal c-KITlo LT-HSCs (E). Dot plot of NES of Hallmark gene sets significantly enriched (FDR < 0.05) in CML c-KITlo LT-HSCs compared with CML c-KIThi LT-HSCs (CL vs. CH) and normal c-KITlo LT-HSCs compared to normal c-KIThi LT-HSCs (NL vs. NH). Gene sets that are selectively enriched in CML c-KITlo LT-HSCs but not normal c-KITlo LT-HSCs are indicated in red (positively enriched) and blue (negatively enriched) (F).

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