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An ELF4 hypomorphic variant results in NK cell deficiency
Sandra Andrea Salinas, Emily M. Mace, Matilde I. Conte, Chun Shik Park, Yu Li, Joshua I. Rosario-Sepulveda, Sanjana Mahapatra, Emily K. Moore, Evelyn R. Hernandez, Ivan K. Chinn, Abigail E. Reed, Barclay J. Lee, Alexander Frumovitz, Richard A. Gibbs, Jennifer E. Posey, Lisa R. Forbes Satter, Akaluck Thatayatikom, Eric J. Allenspach, Theodore G. Wensel, James R. Lupski, H. Daniel Lacorazza, Jordan S. Orange
Sandra Andrea Salinas, Emily M. Mace, Matilde I. Conte, Chun Shik Park, Yu Li, Joshua I. Rosario-Sepulveda, Sanjana Mahapatra, Emily K. Moore, Evelyn R. Hernandez, Ivan K. Chinn, Abigail E. Reed, Barclay J. Lee, Alexander Frumovitz, Richard A. Gibbs, Jennifer E. Posey, Lisa R. Forbes Satter, Akaluck Thatayatikom, Eric J. Allenspach, Theodore G. Wensel, James R. Lupski, H. Daniel Lacorazza, Jordan S. Orange
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Research Article Cell biology Immunology

An ELF4 hypomorphic variant results in NK cell deficiency

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Abstract

NK cell deficiencies (NKD) are a type of primary immune deficiency in which the major immunologic abnormality affects NK cell number, maturity, or function. Since NK cells contribute to immune defense against virally infected cells, patients with NKD experience higher susceptibility to chronic, recurrent, and fatal viral infections. An individual with recurrent viral infections and mild hypogammaglobulinemia was identified to have an X-linked damaging variant in the transcription factor gene ELF4. The variant does not decrease expression but disrupts ELF4 protein interactions and DNA binding, reducing transcriptional activation of target genes and selectively impairing ELF4 function. Corroborating previous murine models of ELF4 deficiency (Elf4–/–) and using a knockdown human NK cell line, we determined that ELF4 is necessary for normal NK cell development, terminal maturation, and function. Through characterization of the NK cells of the proband, expression of the proband’s variant in Elf4–/– mouse hematopoietic precursor cells, and a human in vitro NK cell maturation model, we established this ELF4 variant as a potentially novel cause of NKD.

Authors

Sandra Andrea Salinas, Emily M. Mace, Matilde I. Conte, Chun Shik Park, Yu Li, Joshua I. Rosario-Sepulveda, Sanjana Mahapatra, Emily K. Moore, Evelyn R. Hernandez, Ivan K. Chinn, Abigail E. Reed, Barclay J. Lee, Alexander Frumovitz, Richard A. Gibbs, Jennifer E. Posey, Lisa R. Forbes Satter, Akaluck Thatayatikom, Eric J. Allenspach, Theodore G. Wensel, James R. Lupski, H. Daniel Lacorazza, Jordan S. Orange

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Figure 6

Normal ELF4 quantity and localization in the presence of c.C560A p.T187N.

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Normal ELF4 quantity and localization in the presence of c.C560A p.T187N...
(A) Western blot of proband and healthy participant BLCLs (top) and quantification (bottom) of ELF4 expression normalized to tubulin loading control. (B) ELF4 MFI with a representative histogram (top) and quantification (bottom) assessed using imaging flow cytometry, with IgG control. (C) ELF4 MFI in different stages of cell cycle within representative histograms for healthy control and proband (top) and quantification (bottom), with IgG control. (D) ELF4 protein domains. P, phosphorylation sites predicted (gray) and experimentally confirmed (magenta); S, SUMOylation; Ub, ubiquitination; NLS, nuclear localization signal with T187N variant location (inset). (E) Proportion of ELF4 localizing to the nucleus in BLCLs assessed by imaging flow cytometry (left) with representative histograms (middle) and images (right) of bright-field, nucleus, and ELF4, and an overlay of ELF4/nuclear dye (scale bar: 7 μm). (F) Nuclear localization of ELF4 determined in different stages of the cell cycle. (G) Western blot of ELF4 wild-type and T187N variant overexpression in HEK293T in the nuclear and cytoplasmic fractions (left), with quantification (right), normalized to Lamin B1 and tubulin loading control for the respective fractions and further normalized to wild-type control. The data represent mean ± SEM of ≥3 independent experiments; images represent experiments repeated at least 3 times; 1-way ANOVA with multiple comparisons (A–C, E, and F), 2-tailed Student’s t test (G).

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