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TET2 regulates immune tolerance in chronically activated mast cells
Riccardo Rigo, Rabie Chelbi, Julie Agopian, Sebastien Letard, Aurélien Griffon, Hussein Ghamlouch, Julien Vernerey, Vasileios Ladopoulos, Edwige Voisset, Paulo De Sepulveda, Geoffrey Guittard, Jacques A. Nunès, Ghislain Bidaut, Berthold Göttgens, Michael Weber, Olivier A. Bernard, Patrice Dubreuil, Erinn Soucie
Riccardo Rigo, Rabie Chelbi, Julie Agopian, Sebastien Letard, Aurélien Griffon, Hussein Ghamlouch, Julien Vernerey, Vasileios Ladopoulos, Edwige Voisset, Paulo De Sepulveda, Geoffrey Guittard, Jacques A. Nunès, Ghislain Bidaut, Berthold Göttgens, Michael Weber, Olivier A. Bernard, Patrice Dubreuil, Erinn Soucie
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Research Article Inflammation

TET2 regulates immune tolerance in chronically activated mast cells

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Abstract

Mutation of the TET2 DNA-hydroxymethylase has been associated with a number of immune pathologies. The disparity in phenotype and clinical presentation among these pathologies leads to questions regarding the role of TET2 mutation in promoting disease evolution in different immune cell types. Here we show that, in primary mast cells, Tet2 expression is induced in response to chronic and acute activation signals. In TET2-deficient mast cells, chronic activation via the oncogenic KITD816V allele associated with mastocytosis, selects for a specific epigenetic signature characterized by hypermethylated DNA regions (HMR) at immune response genes. H3K27ac and transcription factor binding is consistent with priming or more open chromatin at both HMR and non-HMR in proximity to immune genes in these cells, and this signature coincides with increased pathological inflammation signals. HMR are also associated with a subset of immune genes that are direct targets of TET2 and repressed in TET2-deficient cells. Repression of these genes results in immune tolerance to acute stimulation that can be rescued with vitamin C treatment or reiterated with a Tet inhibitor. Overall, our data support a model where TET2 plays a direct role in preventing immune tolerance in chronically activated mast cells, supporting TET2 as a viable target to reprogram the innate immune response for innovative therapies.

Authors

Riccardo Rigo, Rabie Chelbi, Julie Agopian, Sebastien Letard, Aurélien Griffon, Hussein Ghamlouch, Julien Vernerey, Vasileios Ladopoulos, Edwige Voisset, Paulo De Sepulveda, Geoffrey Guittard, Jacques A. Nunès, Ghislain Bidaut, Berthold Göttgens, Michael Weber, Olivier A. Bernard, Patrice Dubreuil, Erinn Soucie

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Figure 3

Mast cell activation genes are upregulated in Tet2+/+KITD816V and Tet2–/–KITD816V cells, but a subset of these genes is repressed in Tet2–/–KITD816V cells.

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Mast cell activation genes are upregulated in Tet2+/+KITD816V and Tet2–/...
(A) Heatmap of normalized RNA-Seq read counts used as signals for gene expression. The top 500 genes with highest variances among conditions were filtered in, and normalized counts were finally standardized as Z score. Samples and genes were clustered using Spearman and Pearson correlation, respectively. (B) Venn diagram showing the number of genes differentially expressed between Tet2+/+ mast cells versus Tet2+/+KITD816V, Tet2–/–, or Tet2–/–KITD816V cells as determined by RNA-Seq and consistent between 2 independent biological replicates for each cell population. (C) Heatmap showing results of gene ontology analysis for genes differentially expressed in Tet2+/+ versus Tet2+/+KITD816V (lane 1), Tet2–/– (lane 2), or Tet2–/–KITD816V (lane 3) mast cells. Immune-associated pathways are highlighted in red. (D) Radar plots of normalized enrichment scores (NES) from gene set enrichment analysis comparing genes downregulated (lower plot) or upregulated (upper plot) in Tet2+/+ versus Tet2+/+ KITD816V (gray line) or Tet2–/–KITD816V (blue line) to genes enriched in indicated cell types compared with WT mast cells.

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