Go to The Journal of Clinical Investigation
  • About
  • Editors
  • Consulting Editors
  • For authors
  • Publication ethics
  • Publication alerts by email
  • Transfers
  • Advertising
  • Job board
  • Contact
  • Physician-Scientist Development
  • Current issue
  • Past issues
  • By specialty
    • COVID-19
    • Cardiology
    • Immunology
    • Metabolism
    • Nephrology
    • Oncology
    • Pulmonology
    • All ...
  • Videos
  • Collections
    • In-Press Preview
    • Resource and Technical Advances
    • Clinical Research and Public Health
    • Research Letters
    • Editorials
    • Perspectives
    • Physician-Scientist Development
    • Reviews
    • Top read articles

  • Current issue
  • Past issues
  • Specialties
  • In-Press Preview
  • Resource and Technical Advances
  • Clinical Research and Public Health
  • Research Letters
  • Editorials
  • Perspectives
  • Physician-Scientist Development
  • Reviews
  • Top read articles
  • About
  • Editors
  • Consulting Editors
  • For authors
  • Publication ethics
  • Publication alerts by email
  • Transfers
  • Advertising
  • Job board
  • Contact
Single-cell transcriptomics reveals skewed cellular communication and phenotypic shift in pulmonary artery remodeling
Slaven Crnkovic, Francesco Valzano, Elisabeth Fließer, Jürgen Gindlhuber, Helene Thekkekara Puthenparampil, Maria Basil, Mike P. Morley, Jeremy Katzen, Elisabeth Gschwandtner, Walter Klepetko, Edward Cantu, Heimo Wolinski, Horst Olschewski, Jörg Lindenmann, You-Yang Zhao, Edward E. Morrisey, Leigh M. Marsh, Grazyna Kwapiszewska
Slaven Crnkovic, Francesco Valzano, Elisabeth Fließer, Jürgen Gindlhuber, Helene Thekkekara Puthenparampil, Maria Basil, Mike P. Morley, Jeremy Katzen, Elisabeth Gschwandtner, Walter Klepetko, Edward Cantu, Heimo Wolinski, Horst Olschewski, Jörg Lindenmann, You-Yang Zhao, Edward E. Morrisey, Leigh M. Marsh, Grazyna Kwapiszewska
View: Text | PDF
Research Article Pulmonology Vascular biology

Single-cell transcriptomics reveals skewed cellular communication and phenotypic shift in pulmonary artery remodeling

  • Text
  • PDF
Abstract

A central feature of progressive vascular remodeling is altered smooth muscle cell (SMC) homeostasis; however, the understanding of how different cell populations contribute to this process is limited. Here, we utilized single-cell RNA sequencing to provide insight into cellular composition changes within isolated pulmonary arteries (PAs) from pulmonary arterial hypertension and donor lungs. Our results revealed that remodeling skewed the balanced communication network between immune and structural cells, in particular SMCs. Comparative analysis with murine PAs showed that human PAs harbored heterogeneous SMC populations with an abundant intermediary cluster displaying a gradient transition between SMCs and adventitial fibroblasts. Transcriptionally distinct SMC populations were enriched in specific biological processes and could be differentiated into 4 major clusters: oxygen sensing (enriched in pericytes), contractile, synthetic, and fibroblast-like. End-stage remodeling was associated with phenotypic shift of preexisting SMC populations and accumulation of synthetic SMCs in neointima. Distinctly regulated genes in clusters built nonredundant regulatory hubs encompassing stress response and differentiation regulators. The current study provides a blueprint of cellular and molecular changes on a single-cell level that are defining the pathological vascular remodeling process.

Authors

Slaven Crnkovic, Francesco Valzano, Elisabeth Fließer, Jürgen Gindlhuber, Helene Thekkekara Puthenparampil, Maria Basil, Mike P. Morley, Jeremy Katzen, Elisabeth Gschwandtner, Walter Klepetko, Edward Cantu, Heimo Wolinski, Horst Olschewski, Jörg Lindenmann, You-Yang Zhao, Edward E. Morrisey, Leigh M. Marsh, Grazyna Kwapiszewska

×

Figure 2

Vascular remodeling alters intercellular signaling in human pulmonary artery.

Options: View larger image (or click on image) Download as PowerPoint
Vascular remodeling alters intercellular signaling in human pulmonary ar...
(A) Uniform manifold approximation and projection (UMAP) of pulmonary artery (PA) single-cell RNA sequencing (scRNA-Seq) from donors (n = 3) and pulmonary arterial hypertension (PAH) patients (n = 3) annotated and subdivided into structural, immune, and epithelial cell types. Endo 1,2, endothelial cells 1,2; Fibro, fibroblasts; SMC 1,2, smooth muscle cells 1,2; DC, dendritic cells; Mono/Macs, monocytes and macrophages. (B and C) Cell population percentage of (B) structural and (C) immune cell types in donor (green) and PAH (red) samples. T test, *P < 0.05. (D) Bar plot representing differentially expressed gene (DEG) analysis performed on PA cell populations. Wilcoxon rank sum test with Bonferroni adjustment, P < 0.05. Gray bars indicate the total number of DEG terms highlighted from the analysis while colored part indicates the proportion of DEG terms significantly enriched in PAH (red) and donor (green). Ligand-receptor interactions performed on (E) donor and (F) PAH PA structural and immune cell types using FANTOM5 project with added weights according to STRING database. Thickness of arrows is relative to total number of found interaction pairs; color-coding depicts gradient of significant interactions. Permutation test (number of permutations = 100,000), P < 0.05. (G) Scheme representing differential expression of ligand-receptor pairs in donor (green) and PAH (red) PA. Gray dots represent ligands or receptors not detected in the analysis. Score assessed as the sum of the total ligand or receptor weights associated with every cell population.

Copyright © 2026 American Society for Clinical Investigation
ISSN 2379-3708

Sign up for email alerts