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Single-cell transcriptomics reveals skewed cellular communication and phenotypic shift in pulmonary artery remodeling
Slaven Crnkovic, Francesco Valzano, Elisabeth Fließer, Jürgen Gindlhuber, Helene Thekkekara Puthenparampil, Maria Basil, Mike P. Morley, Jeremy Katzen, Elisabeth Gschwandtner, Walter Klepetko, Edward Cantu, Heimo Wolinski, Horst Olschewski, Jörg Lindenmann, You-Yang Zhao, Edward E. Morrisey, Leigh M. Marsh, Grazyna Kwapiszewska
Slaven Crnkovic, Francesco Valzano, Elisabeth Fließer, Jürgen Gindlhuber, Helene Thekkekara Puthenparampil, Maria Basil, Mike P. Morley, Jeremy Katzen, Elisabeth Gschwandtner, Walter Klepetko, Edward Cantu, Heimo Wolinski, Horst Olschewski, Jörg Lindenmann, You-Yang Zhao, Edward E. Morrisey, Leigh M. Marsh, Grazyna Kwapiszewska
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Research Article Pulmonology Vascular biology

Single-cell transcriptomics reveals skewed cellular communication and phenotypic shift in pulmonary artery remodeling

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Abstract

A central feature of progressive vascular remodeling is altered smooth muscle cell (SMC) homeostasis; however, the understanding of how different cell populations contribute to this process is limited. Here, we utilized single-cell RNA sequencing to provide insight into cellular composition changes within isolated pulmonary arteries (PAs) from pulmonary arterial hypertension and donor lungs. Our results revealed that remodeling skewed the balanced communication network between immune and structural cells, in particular SMCs. Comparative analysis with murine PAs showed that human PAs harbored heterogeneous SMC populations with an abundant intermediary cluster displaying a gradient transition between SMCs and adventitial fibroblasts. Transcriptionally distinct SMC populations were enriched in specific biological processes and could be differentiated into 4 major clusters: oxygen sensing (enriched in pericytes), contractile, synthetic, and fibroblast-like. End-stage remodeling was associated with phenotypic shift of preexisting SMC populations and accumulation of synthetic SMCs in neointima. Distinctly regulated genes in clusters built nonredundant regulatory hubs encompassing stress response and differentiation regulators. The current study provides a blueprint of cellular and molecular changes on a single-cell level that are defining the pathological vascular remodeling process.

Authors

Slaven Crnkovic, Francesco Valzano, Elisabeth Fließer, Jürgen Gindlhuber, Helene Thekkekara Puthenparampil, Maria Basil, Mike P. Morley, Jeremy Katzen, Elisabeth Gschwandtner, Walter Klepetko, Edward Cantu, Heimo Wolinski, Horst Olschewski, Jörg Lindenmann, You-Yang Zhao, Edward E. Morrisey, Leigh M. Marsh, Grazyna Kwapiszewska

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Figure 1

Pulmonary artery niche is composed of diverse structural and immune cell populations.

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Pulmonary artery niche is composed of diverse structural and immune cell...
(A and B) Representative 3-dimensional (3D) images of precision-cut human lung slices (200 μm thickness, n = 5) from donor (A) and idiopathic pulmonary arterial hypertension (IPAH) patient (B) stained against endothelial cells (VWF, cyan), smooth muscle cells (ACTA2, red), fibroblasts (DCN, magenta), and immune cells (CD45, green). DAPI, nuclei (blue, top panel). 3D rendering of the smooth muscle cells (red) and immune cells embedded in the arterial wall (yellow). Scale bar = 200 μm. (C) Scheme of human pulmonary artery (PA) processing for single-cell RNA sequencing (scRNA-Seq). (D) Uniform manifold approximation and projection (UMAP) of the PA scRNA-Seq data of donor (n = 3) and pulmonary arterial hypertension (PAH) samples (n = 3). (E) Annotated UMAP of human PA scRNA-Seq. (F) Sunburst plot representing human PA cell populations’ proportions. (G) Annotated UMAP of scRNA-Seq captured from normoxia (n = 3) and 3 weeks’ hypoxia (n = 3) murine PAs. (H) Sunburst plot representing murine PA cell populations’ proportions. Fibro, fibroblasts; SMC1, smooth muscle cells 1; SMC 2/pericyte, smooth muscle cells 2 and pericytes; Endo 1,2,3/EC1,2, endothelial cells 1,2,3; Epithelial 1,2/Epit1,2, epithelial cells 1,2; Mono/Macs 1,2,3, monocytes and macrophages 1,2,3; prolif T cells, proliferating T cells; RBC, red blood cells; DC, dendritic cells.

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