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Combinatorial transcription factor profiles predict mature and functional human islet α and β cells
Shristi Shrestha, … , Alvin C. Powers, Marcela Brissova
Shristi Shrestha, … , Alvin C. Powers, Marcela Brissova
Published August 24, 2021
Citation Information: JCI Insight. 2021;6(18):e151621. https://doi.org/10.1172/jci.insight.151621.
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Resource and Technical Advance Cell biology Endocrinology

Combinatorial transcription factor profiles predict mature and functional human islet α and β cells

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Abstract

Islet-enriched transcription factors (TFs) exert broad control over cellular processes in pancreatic α and β cells, and changes in their expression are associated with developmental state and diabetes. However, the implications of heterogeneity in TF expression across islet cell populations are not well understood. To define this TF heterogeneity and its consequences for cellular function, we profiled more than 40,000 cells from normal human islets by single-cell RNA-Seq and stratified α and β cells based on combinatorial TF expression. Subpopulations of islet cells coexpressing ARX/MAFB (α cells) and MAFA/MAFB (β cells) exhibited greater expression of key genes related to glucose sensing and hormone secretion relative to subpopulations expressing only one or neither TF. Moreover, all subpopulations were identified in native pancreatic tissue from multiple donors. By Patch-Seq, MAFA/MAFB-coexpressing β cells showed enhanced electrophysiological activity. Thus, these results indicate that combinatorial TF expression in islet α and β cells predicts highly functional, mature subpopulations.

Authors

Shristi Shrestha, Diane C. Saunders, John T. Walker, Joan Camunas-Soler, Xiao-Qing Dai, Rachana Haliyur, Radhika Aramandla, Greg Poffenberger, Nripesh Prasad, Rita Bottino, Roland Stein, Jean-Philippe Cartailler, Stephen C.J. Parker, Patrick E. MacDonald, Shawn E. Levy, Alvin C. Powers, Marcela Brissova

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Figure 4

Heterogeneity of ARX and MAFB expression in α cells by scRNA-Seq correlates with expression of key functional genes.

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Heterogeneity of ARX and MAFB expression in α cells by scRNA-Seq correla...
(A) UMAP visualization of 24,248 α cells (n = 5 donors) pseudocolored to show detected expression, from left to right, of ARX (blue); MAFB (red); and both ARX and MAFB with 0.5 color threshold scale. (B) Scatterplot on the left is depicting 4 distinct α cell populations based on detected expression (natural log of unique molecular identifiers per 10,000 + 1) of ARX and MAFB: those expressing neither factor (10%), those expressing only ARX (4%) or only MAFB (48%), and those coexpressing ARX and MAFB (38%). Chart on the right shows cell populations by donor, with the outermost circle reflecting totals. (C) Dot plot showing the relative expression of selected genes related to α cell identity, ion flux, glucose metabolism, vesicle trafficking, exocytotic machinery, and cellular stress of the 4 α cell populations in B. Dot size indicates the percentage of α cells with detectable transcripts; color indicates the gene’s mean expression z score. See Supplemental Figure 5 for comparison with other single-cell studies. (D) Immunohistochemical staining of ARX (blue) and MAFB (red) in glucagon-expressing (GCG-expressing) α cells (green) of a nondiabetic adult (55 years, Supplemental Table 4). Numbered arrowheads indicate the presence of 4 α populations: 1, ARXlo MAFBlo; 2, ARXhi MAFBlo; 3, ARXlo MAFBhi; 4, ARXhi MAFBhi. (E) Quantification of α cell populations shown in D (n = 2369 α cells). Outermost circle represents composite count and inner circles represent α cells from each of n = 3 donors (see also Supplemental Figure 5B).

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