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Epigenetic drug screening defines a PRMT5 inhibitor–sensitive pancreatic cancer subtype
Felix Orben, Katharina Lankes, Christian Schneeweis, Zonera Hassan, Hannah Jakubowsky, Lukas Krauß, Fabio Boniolo, Carolin Schneider, Arlett Schäfer, Janine Murr, Christoph Schlag, Bo Kong, Rupert Öllinger, Chengdong Wang, Georg Beyer, Ujjwal M. Mahajan, Yonggan Xue, Julia Mayerle, Roland M. Schmid, Bernhard Kuster, Roland Rad, Christian J. Braun, Matthias Wirth, Maximilian Reichert, Dieter Saur, Günter Schneider
Felix Orben, Katharina Lankes, Christian Schneeweis, Zonera Hassan, Hannah Jakubowsky, Lukas Krauß, Fabio Boniolo, Carolin Schneider, Arlett Schäfer, Janine Murr, Christoph Schlag, Bo Kong, Rupert Öllinger, Chengdong Wang, Georg Beyer, Ujjwal M. Mahajan, Yonggan Xue, Julia Mayerle, Roland M. Schmid, Bernhard Kuster, Roland Rad, Christian J. Braun, Matthias Wirth, Maximilian Reichert, Dieter Saur, Günter Schneider
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Research Article Cell biology Oncology

Epigenetic drug screening defines a PRMT5 inhibitor–sensitive pancreatic cancer subtype

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Abstract

Systemic therapies for pancreatic ductal adenocarcinoma (PDAC) remain unsatisfactory. Clinical prognosis is particularly poor for tumor subtypes with activating aberrations in the MYC pathway, creating an urgent need for novel therapeutic targets. To unbiasedly find MYC-associated epigenetic dependencies, we conducted a drug screen in pancreatic cancer cell lines. Here, we found that protein arginine N-methyltransferase 5 (PRMT5) inhibitors triggered an MYC-associated dependency. In human and murine PDACs, a robust connection of MYC and PRMT5 was detected. By the use of gain- and loss-of-function models, we confirmed the increased efficacy of PRMT5 inhibitors in MYC-deregulated PDACs. Although inhibition of PRMT5 was inducing DNA damage and arresting PDAC cells in the G2/M phase of the cell cycle, apoptotic cell death was executed predominantly in cells with high MYC expression. Experiments in primary patient-derived PDAC models demonstrated the existence of a highly PRMT5 inhibitor–sensitive subtype. Our work suggests developing PRMT5 inhibitor–based therapies for PDAC.

Authors

Felix Orben, Katharina Lankes, Christian Schneeweis, Zonera Hassan, Hannah Jakubowsky, Lukas Krauß, Fabio Boniolo, Carolin Schneider, Arlett Schäfer, Janine Murr, Christoph Schlag, Bo Kong, Rupert Öllinger, Chengdong Wang, Georg Beyer, Ujjwal M. Mahajan, Yonggan Xue, Julia Mayerle, Roland M. Schmid, Bernhard Kuster, Roland Rad, Christian J. Braun, Matthias Wirth, Maximilian Reichert, Dieter Saur, Günter Schneider

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Figure 5

PRMT5 inhibition induces apoptosis and alters metabolism in PDAC cells with deregulated MYC.

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PRMT5 inhibition induces apoptosis and alters metabolism in PDAC cells w...
(A) Activity of caspase-3/7 in 2 MYC-high (DanG, PSN1) and 2 MYC-low (Panc1, PaTu8988S) cell lines after treatment with 40 nM JNJ-64619178 for 3 days. Left panel: fold induction of caspase-3/7 in each line, 3 biological replicates per line were performed; right panel: mean fold induction of caspase-3/7 of the 2 MYC-high and 2 MYC-low lines. (B) RNA-Seq of untreated and JNJ-64619178–treated (3 days, 20 nM) DanG and PSN1 cells analyzed with GSEA and the HALLMARK signatures. Signatures with a q less than 0.05 were investigated in a Venn diagram. The 5 signatures modulated by JNJ-64619178 in both lines, including their q value, are depicted. (C) Cell lines with low MYC expression (Panc1 and HPAC, blue) and high MYC expression (DanG and PSN1, red) were treated with 20 nM JNJ-64619178 for 3 days. Extracellular acidification rate (ECAR) values were measured via the Seahorse assay and used to calculate glycolysis, glycolytic capacity, and glycolytic reserve. *P < 0.05; unpaired 2-tailed t test (n ≥ 3). (D) Percentage inhibition of glycolysis based on the ECAR values from C. (E) Cell cycle distribution of the indicated cell lines (MYC high: PSN1; MYC low: Panc1). Cell cycle distribution was determined by FACS of propidium iodide–stained cells. Cells were treated with 20 nM JNJ-64619178 or DMSO for 4 days. Results of 3 biological replicates are shown. **P < 0.01; P value in PSN1 cells is depicted; paired 2-tailed t test. (F) Aurora kinase B (AURKB) Western blot analysis of indicated cell lines treated for 4 days with 20 nM JNJ-64619178 or left as a vehicle-treated control. β-Actin: loading control. One representative experiment out of 2 replicates is depicted.

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