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Epigenetic drug screening defines a PRMT5 inhibitor–sensitive pancreatic cancer subtype
Felix Orben, Katharina Lankes, Christian Schneeweis, Zonera Hassan, Hannah Jakubowsky, Lukas Krauß, Fabio Boniolo, Carolin Schneider, Arlett Schäfer, Janine Murr, Christoph Schlag, Bo Kong, Rupert Öllinger, Chengdong Wang, Georg Beyer, Ujjwal M. Mahajan, Yonggan Xue, Julia Mayerle, Roland M. Schmid, Bernhard Kuster, Roland Rad, Christian J. Braun, Matthias Wirth, Maximilian Reichert, Dieter Saur, Günter Schneider
Felix Orben, Katharina Lankes, Christian Schneeweis, Zonera Hassan, Hannah Jakubowsky, Lukas Krauß, Fabio Boniolo, Carolin Schneider, Arlett Schäfer, Janine Murr, Christoph Schlag, Bo Kong, Rupert Öllinger, Chengdong Wang, Georg Beyer, Ujjwal M. Mahajan, Yonggan Xue, Julia Mayerle, Roland M. Schmid, Bernhard Kuster, Roland Rad, Christian J. Braun, Matthias Wirth, Maximilian Reichert, Dieter Saur, Günter Schneider
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Research Article Cell biology Oncology

Epigenetic drug screening defines a PRMT5 inhibitor–sensitive pancreatic cancer subtype

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Abstract

Systemic therapies for pancreatic ductal adenocarcinoma (PDAC) remain unsatisfactory. Clinical prognosis is particularly poor for tumor subtypes with activating aberrations in the MYC pathway, creating an urgent need for novel therapeutic targets. To unbiasedly find MYC-associated epigenetic dependencies, we conducted a drug screen in pancreatic cancer cell lines. Here, we found that protein arginine N-methyltransferase 5 (PRMT5) inhibitors triggered an MYC-associated dependency. In human and murine PDACs, a robust connection of MYC and PRMT5 was detected. By the use of gain- and loss-of-function models, we confirmed the increased efficacy of PRMT5 inhibitors in MYC-deregulated PDACs. Although inhibition of PRMT5 was inducing DNA damage and arresting PDAC cells in the G2/M phase of the cell cycle, apoptotic cell death was executed predominantly in cells with high MYC expression. Experiments in primary patient-derived PDAC models demonstrated the existence of a highly PRMT5 inhibitor–sensitive subtype. Our work suggests developing PRMT5 inhibitor–based therapies for PDAC.

Authors

Felix Orben, Katharina Lankes, Christian Schneeweis, Zonera Hassan, Hannah Jakubowsky, Lukas Krauß, Fabio Boniolo, Carolin Schneider, Arlett Schäfer, Janine Murr, Christoph Schlag, Bo Kong, Rupert Öllinger, Chengdong Wang, Georg Beyer, Ujjwal M. Mahajan, Yonggan Xue, Julia Mayerle, Roland M. Schmid, Bernhard Kuster, Roland Rad, Christian J. Braun, Matthias Wirth, Maximilian Reichert, Dieter Saur, Günter Schneider

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Figure 2

MYC controls PRMT5 expression.

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MYC controls PRMT5 expression.
(A) Western blot showing protein expressi...
(A) Western blot showing protein expression of MYCER and β-actin (loading control) in human IMIM-PC1MYC-ER cells treated with 4-hydroxytamoxifen (4-OHT) (48 hours, 600 nM) or vehicle control (EtOH). One representative experiment out of 3 is shown. (B) GSEA of RNA-Seq expression data from human IMIM-PC1MYC-ER cells treated with 4-OHT to activate MYC (24 hours, 500 nM) or vehicle control. Depicted is the HALLMARK signature MYC TARGETS V1, including the q value. (C) Heatmap of selected MYC target genes in human IMIM-PC1MYC-ER cells treated as in B. Adjusted P value of all shown genes; P < 0.05. Data are based on the RNA-Seq described in B. (D) Western blot showing protein expression of MYC, MYCER, PRMT5, and β-actin (loading control) in murine PPT-9091MYC-ER PDAC cells treated with 4-OHT (48 hours, 600 nM) to activate MYC or left as vehicle control. One representative experiment out of 3 is shown. (E) Quantification of 3 independent experiments from D; P value of a paired 2-tailed t test is depicted. (F) Quantification of Prmt5 mRNA expression of murine PPT-9091MYC-ER PDAC cells treated with 4-OHT (48 hours, 600 nM) or vehicle control determined out of 3 biological replicates performed as technical triplicates by qPCR. GAPDH was used to normalize the expression. *P < 0.05; paired 2-tailed t test. (G) PaTu8988T control or PRMT5 CRISPRi cells were analyzed. Western blot of PRMT5 and MYC expression. β-Actin: loading control (n = 2). (H) PaTu8988T control or PRMT5 CRISPRi cells were analyzed for mRNA expression of PRMT5 (left panel) or MYC (right panel). Three biological replicates performed as technical triplicates were analyzed. GAPDH was used to normalize the expression. *P < 0.05; paired 2-tailed t test.

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