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Epigenetic drug screening defines a PRMT5 inhibitor–sensitive pancreatic cancer subtype
Felix Orben, Katharina Lankes, Christian Schneeweis, Zonera Hassan, Hannah Jakubowsky, Lukas Krauß, Fabio Boniolo, Carolin Schneider, Arlett Schäfer, Janine Murr, Christoph Schlag, Bo Kong, Rupert Öllinger, Chengdong Wang, Georg Beyer, Ujjwal M. Mahajan, Yonggan Xue, Julia Mayerle, Roland M. Schmid, Bernhard Kuster, Roland Rad, Christian J. Braun, Matthias Wirth, Maximilian Reichert, Dieter Saur, Günter Schneider
Felix Orben, Katharina Lankes, Christian Schneeweis, Zonera Hassan, Hannah Jakubowsky, Lukas Krauß, Fabio Boniolo, Carolin Schneider, Arlett Schäfer, Janine Murr, Christoph Schlag, Bo Kong, Rupert Öllinger, Chengdong Wang, Georg Beyer, Ujjwal M. Mahajan, Yonggan Xue, Julia Mayerle, Roland M. Schmid, Bernhard Kuster, Roland Rad, Christian J. Braun, Matthias Wirth, Maximilian Reichert, Dieter Saur, Günter Schneider
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Research Article Cell biology Oncology

Epigenetic drug screening defines a PRMT5 inhibitor–sensitive pancreatic cancer subtype

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Abstract

Systemic therapies for pancreatic ductal adenocarcinoma (PDAC) remain unsatisfactory. Clinical prognosis is particularly poor for tumor subtypes with activating aberrations in the MYC pathway, creating an urgent need for novel therapeutic targets. To unbiasedly find MYC-associated epigenetic dependencies, we conducted a drug screen in pancreatic cancer cell lines. Here, we found that protein arginine N-methyltransferase 5 (PRMT5) inhibitors triggered an MYC-associated dependency. In human and murine PDACs, a robust connection of MYC and PRMT5 was detected. By the use of gain- and loss-of-function models, we confirmed the increased efficacy of PRMT5 inhibitors in MYC-deregulated PDACs. Although inhibition of PRMT5 was inducing DNA damage and arresting PDAC cells in the G2/M phase of the cell cycle, apoptotic cell death was executed predominantly in cells with high MYC expression. Experiments in primary patient-derived PDAC models demonstrated the existence of a highly PRMT5 inhibitor–sensitive subtype. Our work suggests developing PRMT5 inhibitor–based therapies for PDAC.

Authors

Felix Orben, Katharina Lankes, Christian Schneeweis, Zonera Hassan, Hannah Jakubowsky, Lukas Krauß, Fabio Boniolo, Carolin Schneider, Arlett Schäfer, Janine Murr, Christoph Schlag, Bo Kong, Rupert Öllinger, Chengdong Wang, Georg Beyer, Ujjwal M. Mahajan, Yonggan Xue, Julia Mayerle, Roland M. Schmid, Bernhard Kuster, Roland Rad, Christian J. Braun, Matthias Wirth, Maximilian Reichert, Dieter Saur, Günter Schneider

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Figure 1

Epigenetic drug screening in human PDAC cells with diverse MYC activity.

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Epigenetic drug screening in human PDAC cells with diverse MYC activity....
(A) Strategy for drug screening experiments using a library of n = 181 epigenetic drugs. Cells were treated for 72 hours with 7 concentrations (maximum 10 μM) of each compound. Hits were determined as difference in the mean area under the dose-response curve (AUC) between MYC-high and MYC-low cell lines with P < 0.05. Screening was conducted as 1 biological replicate in technical triplicates. (B) MYC and PRMT5 protein expression of the 6 indicated cell lines determined by Western blotting. β-Actin: loading control. One representative experiment out of 3 is shown. (C) GSEA of the MYC-high and MYC-low cell lines depicted in A was performed using the GeneTrail3 web tool. Illustrated is the enrichment plot of the HALLMARK signature MYC TARGETS V1, including the q value. (D) Hits of the drug screening depicted as a variance scaled heatmap using AUC values as an input. (E) GSEA of RNA expression data sets with high PRMT5 (expression > 75th percentile) versus low PRMT5 (expression < 75th percentile) mRNA expression with curated TCGA (n = 150) and ICGC (n = 81) data sets. Depicted are the HALLMARK signatures for MYC TARGETS V1, including q values. (F) Depicted is the Pearson correlation coefficient and the linear regression (in red) between MYC and PRMT5 mRNA expression in conventional human PDAC cell lines. Data were directly retrieved from the DepMap portal (n = 52). (G) Pearson’s correlation coefficient between MYC and PRMT5 mRNA expression in the depicted tumor entities. Data were directly retrieved from the DepMap portal; P value is indicated.

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ISSN 2379-3708

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