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Anterograde regulation of mitochondrial genes and FGF21 signaling by hepatic LSD1
Yang Cao, Lingyi Tang, Kang Du, Kitt Paraiso, Qiushi Sun, Zhengxia Liu, Xiaolong Ye, Yuan Fang, Fang Yuan, Hank Chen, Yumay Chen, Xiaorong Wang, Clinton Yu, Ira L. Blitz, Ping H. Wang, Lan Huang, Haibo Cheng, Xiang Lu, Ken W.Y. Cho, Marcus Seldin, Zhuyuan Fang, Qin Yang
Yang Cao, Lingyi Tang, Kang Du, Kitt Paraiso, Qiushi Sun, Zhengxia Liu, Xiaolong Ye, Yuan Fang, Fang Yuan, Hank Chen, Yumay Chen, Xiaorong Wang, Clinton Yu, Ira L. Blitz, Ping H. Wang, Lan Huang, Haibo Cheng, Xiang Lu, Ken W.Y. Cho, Marcus Seldin, Zhuyuan Fang, Qin Yang
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Research Article Endocrinology

Anterograde regulation of mitochondrial genes and FGF21 signaling by hepatic LSD1

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Abstract

Mitochondrial biogenesis and function are controlled by anterograde regulatory pathways involving more than 1000 nuclear-encoded proteins. Transcriptional networks controlling the nuclear-encoded mitochondrial genes remain to be fully elucidated. Here, we show that histone demethylase LSD1 KO from adult mouse liver (LSD1-LKO) reduces the expression of one-third of all nuclear-encoded mitochondrial genes and decreases mitochondrial biogenesis and function. LSD1-modulated histone methylation epigenetically regulates nuclear-encoded mitochondrial genes. Furthermore, LSD1 regulates gene expression and protein methylation of nicotinamide mononucleotide adenylyltransferase 1 (NMNAT1), which controls the final step of NAD+ synthesis and limits NAD+ availability in the nucleus. Lsd1 KO reduces NAD+-dependent SIRT1 and SIRT7 deacetylase activity, leading to hyperacetylation and hypofunctioning of GABPβ and PGC-1α, the major transcriptional factor/cofactor for nuclear-encoded mitochondrial genes. Despite the reduced mitochondrial function in the liver, LSD1-LKO mice are protected from diet-induced hepatic steatosis and glucose intolerance, partially due to induction of hepatokine FGF21. Thus, LSD1 orchestrates a core regulatory network involving epigenetic modifications and NAD+ synthesis to control mitochondrial function and hepatokine production.

Authors

Yang Cao, Lingyi Tang, Kang Du, Kitt Paraiso, Qiushi Sun, Zhengxia Liu, Xiaolong Ye, Yuan Fang, Fang Yuan, Hank Chen, Yumay Chen, Xiaorong Wang, Clinton Yu, Ira L. Blitz, Ping H. Wang, Lan Huang, Haibo Cheng, Xiang Lu, Ken W.Y. Cho, Marcus Seldin, Zhuyuan Fang, Qin Yang

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Figure 1

LSD1 regulates mitochondrial gene expression and function in the liver.

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LSD1 regulates mitochondrial gene expression and function in the liver.
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(A) Lsd1 mRNA levels in the liver, white adipose tissue (WAT), and muscle of liver-specific LSD1–KO mice (LSD1-LKO) (n = 6–8 per group). (B) LSD1-targeted histone modifications in the liver of LSD1-LKO and control mice. (C and D) Gene Set Enrichment Analysis (GSEA) of the RNA-seq data from liver of LSD-LKO and control mice. Mitochondrial matrix and mitochondrial oxidative phosphorylation genes are highly enriched among the reduced genes in LSD1-LKO liver. (E) DAVID analysis of the RNA-seq data. (F) Overlapped mitochondrial genes in the RNA-seq data from LSD1-LKO liver and the Mitocarta2.0 database. (G–J) Gene expression analysis of mitochondrial genes by quantitative PCR (n = 6 per group). (K) Mitochondrial DNA contents measured by quantitative PCR of mitochondrial Cox2 DNA levels using the nuclear gene Fasn as a control (n = 8 per group). (L) Ultrastructure analysis of liver section of LSD1-LKO and controls by electron microscopy. Scale bar: 1 μm. (M) Oxygen consumption rate (OCR) in primary hepatocytes from LSD1-LKO and control mice. The OCR was measured by Seahorse XF24 analyzer (n = 10 per group). (N) Mitochondrial genes in hepatocytes with LSD1 overexpression (LSD1-OX) (n = 4 per group). Data are shown as mean ± SEM. *P < 0.05 by Student’s t test.

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