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Single-cell profiling identifies impaired adaptive NK cells expanded after HCMV reactivation in haploidentical HSCT
Elisa Zaghi, … , Enrico Lugli, Domenico Mavilio
Elisa Zaghi, … , Enrico Lugli, Domenico Mavilio
Published May 18, 2021
Citation Information: JCI Insight. 2021;6(12):e146973. https://doi.org/10.1172/jci.insight.146973.
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Research Article Hematology Immunology

Single-cell profiling identifies impaired adaptive NK cells expanded after HCMV reactivation in haploidentical HSCT

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Abstract

Haploidentical hematopoietic stem cell transplantation (h-HSCT) represents an efficient curative approach for patients affected by hematologic malignancies in which the reduced intensity conditioning induces a state of immunologic tolerance between donor and recipient. However, opportunistic viral infections greatly affect h-HSCT clinical outcomes. NK cells are the first lymphocytes that recover after transplant and provide a prompt defense against human cytomegalovirus (HCMV) infection/reactivation. By undertaking a longitudinal single-cell computational profiling of multiparametric flow cytometry, we show that HCMV accelerates NK cell immune reconstitution together with the expansion of CD158b1b2jpos/NKG2Aneg/NKG2Cpos/NKp30lo NK cells. The frequency of this subset correlates with HCMV viremia, further increases in recipients experiencing multiple episodes of viral reactivations, and persists for months after the infection. The transcriptional profile of FACS-sorted CD158b1b2jpos NK cells confirmed the ability of HCMV to deregulate NKG2C, NKG2A, and NKp30 gene expression, thus inducing the expansion of NK cells with adaptive traits. These NK cells are characterized by the downmodulation of several gene pathways associated with cell migration, the cell cycle, and effector-functions, as well as by a state of metabolic/cellular exhaustion. This profile reflects the functional impairments of adaptive NK cells to produce IFN-γ, a phenomenon also due to the viral-induced expression of lymphocyte-activation gene 3 (LAG-3) and programmed cell death protein 1 (PD-1) checkpoint inhibitors.

Authors

Elisa Zaghi, Michela Calvi, Simone Puccio, Gianmarco Spata, Sara Terzoli, Clelia Peano, Alessandra Roberto, Federica De Paoli, Jasper J.P. van Beek, Jacopo Mariotti, Chiara De Philippis, Barbara Sarina, Rossana Mineri, Stefania Bramanti, Armando Santoro, Vu Thuy Khanh Le-Trilling, Mirko Trilling, Emanuela Marcenaro, Luca Castagna, Clara Di Vito, Enrico Lugli, Domenico Mavilio

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Figure 6

KIRpos NK cells show adaptive responses following HCMV infection/reactivation.

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KIRpos NK cells show adaptive responses following HCMV infection/reactiv...
(A) Heatmap showing the genes significantly deregulated associated with NK cell-mediated functions in KIRpos NK cells from NR versus R. (B) Gene sets involved in adaptive immune responses and enriched in KIRpos NK cells from R retrieved from GO, KEGG, and REACTOME (RE) databases. The colors of the bar indicate the FDR value. (C) Cluster dendrogram and modules from WGCNA. The branches correspond to modules of highly interconnected groups of genes. Colors in the horizontal bar represent the different modules of gene expression. (D) Advanced bubble chart showing REACTOME pathways enriched in blue module of WGCNA. Size and color of the bubbles represent the amount of DEGs enriched in the pathway and their statistics with P values adjusted (P-adj.), respectively.

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