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Single-cell profiling identifies impaired adaptive NK cells expanded after HCMV reactivation in haploidentical HSCT
Elisa Zaghi, … , Enrico Lugli, Domenico Mavilio
Elisa Zaghi, … , Enrico Lugli, Domenico Mavilio
Published May 18, 2021
Citation Information: JCI Insight. 2021;6(12):e146973. https://doi.org/10.1172/jci.insight.146973.
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Research Article Hematology Immunology

Single-cell profiling identifies impaired adaptive NK cells expanded after HCMV reactivation in haploidentical HSCT

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Abstract

Haploidentical hematopoietic stem cell transplantation (h-HSCT) represents an efficient curative approach for patients affected by hematologic malignancies in which the reduced intensity conditioning induces a state of immunologic tolerance between donor and recipient. However, opportunistic viral infections greatly affect h-HSCT clinical outcomes. NK cells are the first lymphocytes that recover after transplant and provide a prompt defense against human cytomegalovirus (HCMV) infection/reactivation. By undertaking a longitudinal single-cell computational profiling of multiparametric flow cytometry, we show that HCMV accelerates NK cell immune reconstitution together with the expansion of CD158b1b2jpos/NKG2Aneg/NKG2Cpos/NKp30lo NK cells. The frequency of this subset correlates with HCMV viremia, further increases in recipients experiencing multiple episodes of viral reactivations, and persists for months after the infection. The transcriptional profile of FACS-sorted CD158b1b2jpos NK cells confirmed the ability of HCMV to deregulate NKG2C, NKG2A, and NKp30 gene expression, thus inducing the expansion of NK cells with adaptive traits. These NK cells are characterized by the downmodulation of several gene pathways associated with cell migration, the cell cycle, and effector-functions, as well as by a state of metabolic/cellular exhaustion. This profile reflects the functional impairments of adaptive NK cells to produce IFN-γ, a phenomenon also due to the viral-induced expression of lymphocyte-activation gene 3 (LAG-3) and programmed cell death protein 1 (PD-1) checkpoint inhibitors.

Authors

Elisa Zaghi, Michela Calvi, Simone Puccio, Gianmarco Spata, Sara Terzoli, Clelia Peano, Alessandra Roberto, Federica De Paoli, Jasper J.P. van Beek, Jacopo Mariotti, Chiara De Philippis, Barbara Sarina, Rossana Mineri, Stefania Bramanti, Armando Santoro, Vu Thuy Khanh Le-Trilling, Mirko Trilling, Emanuela Marcenaro, Luca Castagna, Clara Di Vito, Enrico Lugli, Domenico Mavilio

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Figure 2

High-dimensional single-cell analysis of NK cell phenotype in h-HSCT recipients.

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High-dimensional single-cell analysis of NK cell phenotype in h-HSCT rec...
(A) UMAP plots showing the mean fluorescence intensity (MFI) of markers on concatenated NK cells (2,000 cells/sample) from both NR and R recipients at different time points after h-HSCT. (B) Heatmap showing the expression as a percentage of NK cell markers (columns) on the 28 clusters (rows) assessed by PhenoGraph from h-HSCT recipients regardless of HCMV reactivation/infection (left). Statistical balloon plots showing the median frequencies of each PhenoGraph NK cell cluster in R (n = 13) and NR (n = 6) recipients at three different time points (1–2, 3–4, and 8–12 months) after h-HSCT (right). Multiple t tests, NR versus R recipients. *P < 0.05, **P < 0.01, ***P < 0.001.

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