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lncRNA DRAIR is downregulated in diabetic monocytes and modulates the inflammatory phenotype via epigenetic mechanisms
Marpadga A. Reddy, … , Sridevi Devaraj, Rama Natarajan
Marpadga A. Reddy, … , Sridevi Devaraj, Rama Natarajan
Published May 4, 2021
Citation Information: JCI Insight. 2021;6(11):e143289. https://doi.org/10.1172/jci.insight.143289.
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Research Article Inflammation Metabolism

lncRNA DRAIR is downregulated in diabetic monocytes and modulates the inflammatory phenotype via epigenetic mechanisms

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Abstract

Long noncoding RNAs (lncRNAs) are increasingly implicated in the pathology of diabetic complications. Here, we examined the role of lncRNAs in monocyte dysfunction and inflammation associated with human type 2 diabetes mellitus (T2D). RNA sequencing analysis of CD14+ monocytes from patients with T2D versus healthy controls revealed downregulation of antiinflammatory and antiproliferative genes, along with several lncRNAs, including a potentially novel divergent lncRNA diabetes regulated antiinflammatory RNA (DRAIR) and its nearby gene CPEB2. High glucose and palmitic acid downregulated DRAIR in cultured CD14+ monocytes, whereas antiinflammatory cytokines and monocyte-to-macrophage differentiation upregulated DRAIR via KLF4 transcription factor. DRAIR overexpression increased antiinflammatory and macrophage differentiation genes but inhibited proinflammatory genes. Conversely, DRAIR knockdown attenuated antiinflammatory genes, promoted inflammatory responses, and inhibited phagocytosis. DRAIR regulated target gene expression through interaction with chromatin, as well as inhibition of the repressive epigenetic mark H3K9me2 and its corresponding methyltransferase G9a. Mouse orthologous Drair and Cpeb2 were also downregulated in peritoneal macrophages from T2D db/db mice, and Drair knockdown in nondiabetic mice enhanced proinflammatory genes in macrophages. Thus, DRAIR modulates the inflammatory phenotype of monocytes/macrophages via epigenetic mechanisms, and its downregulation in T2D may promote chronic inflammation. Augmentation of endogenous lncRNAs like DRAIR could serve as novel antiinflammatory therapies for diabetic complications.

Authors

Marpadga A. Reddy, Vishnu Amaram, Sadhan Das, Vinay Singh Tanwar, Rituparna Ganguly, Mei Wang, Linda Lanting, Lingxiao Zhang, Maryam Abdollahi, Zhuo Chen, Xiwei Wu, Sridevi Devaraj, Rama Natarajan

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Figure 3

Effect of DRAIR overexpression or knockdown on proinflammatory gene expression and phenotype of THP1 monocytes.

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Effect of DRAIR overexpression or knockdown on proinflammatory gene expr...
(A–H) Effects of DRAIR overexpression. qPCR analysis of indicated genes in THP1 cells transduced with lentivruses expressing DRAIR or a control vector (EV). *P < 0.05; **P < 0.01; ***P < 0.001, by t test (n = 3). (I–L) Effects of DRAIR knockdown with siRNAs. THP1 cells were transfected with control siRNA (siNC) or siRNA targeting DRAIR (siDR). Two days later, cells were treated with or without with LPS (100 ng/mL) for 24 hours, and gene expression was analyzed by qPCR. Results expressed as fold over siNC control. (M–O) qPCR analysis of THP1 cells transfected with siNC or siDR treated ± PMA (20 ng/mL) for 24 hours. Results expressed as fold over siNC control (Ctrl). For I–O, *P < 0.05; ***P < 0.001 versus siNC control and †P < 0.05 versus siNC LPS as determined by 2-way ANOVA (I–L), 1-way ANOVA (M–O), and Sidak’s multiple-comparison test (n = 3). (P and Q) THP1 cells transfected with siDR or siNC were treated ± TNF-α (10 ng/mL, 3 hours), labeled with DAPI, and used in monocyte–endothelial cell (monocyte-EC) adhesion assays. Images of bound monocytes were collected using a fluorescence microscope (P). Total original magnification, ×100. Bound monocytes from multiple wells/group were quantified using ImageJ software (Q). *P < 0.05; ***P < 0.001 as determined by 1-way ANOVA and Sidak’s multiple-comparison test (versus siNC control, n = 25–29). (R) Phagocytosis assays were performed with fluorescently labeled E. coli bioparticles in THP1 macrophages transfected with siDR or siNC and treated with IL-4 (20 ng/mL) or LPS (100 ng/mL) for 24 hours. Results shown as fluorescence from phagocytosed particles. **P < 0.01; ***P < 0.001 as determined by multiple unpaired t tests, with correction for multiple comparisons using the Holm-Sidak method (versus siNC, n = 6).

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