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Proteomics identifies a convergent innate response to infective endocarditis and extensive proteolysis in vegetation components
Daniel R. Martin, James C. Witten, Carmela D. Tan, E. Rene Rodriguez, Eugene H. Blackstone, Gosta B. Pettersson, Deborah E. Seifert, Belinda B. Willard, Suneel S. Apte
Daniel R. Martin, James C. Witten, Carmela D. Tan, E. Rene Rodriguez, Eugene H. Blackstone, Gosta B. Pettersson, Deborah E. Seifert, Belinda B. Willard, Suneel S. Apte
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Research Article Cardiology Infectious disease

Proteomics identifies a convergent innate response to infective endocarditis and extensive proteolysis in vegetation components

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Abstract

Infective endocarditis is a life-threatening infection of heart valves and adjacent structures characterized by vegetations on valves and other endocardial surfaces, with tissue destruction and risk of embolization. We used high-resolution mass spectrometry to define the proteome of staphylococcal and non-staphylococcal vegetations and Terminal Amine Isotopic Labeling of Substrates (TAILS) to define their proteolytic landscapes. These approaches identified over 2000 human proteins in staphylococcal and non-staphylococcal vegetations. Individual vegetation proteomes demonstrated comparable profiles of quantitatively major constituents that overlapped with serum, platelet, and neutrophil proteomes. Staphylococcal vegetation proteomes resembled one another more than the proteomes of non-staphylococcal vegetations. TAILS demonstrated extensive proteolysis within vegetations, with numerous previously undescribed cleavages. Several proteases and pathogen-specific proteins, including virulence factors, were identified in most vegetations. Proteolytic peptides in fibronectin and complement C3 were identified as potential infective endocarditis biomarkers. Overlap of staphylococcal and non-staphylococcal vegetation proteomes suggests a convergent thrombotic and immune response to endocardial infection by diverse pathogens. However, the differences between staphylococcal and non-staphylococcal vegetations and internal variance within the non-staphylococcal group indicate that additional pathogen- or patient-specific effects exist. Pervasive proteolysis of vegetation components may arise from vegetation-intrinsic proteases and destabilize vegetations, contributing to embolism.

Authors

Daniel R. Martin, James C. Witten, Carmela D. Tan, E. Rene Rodriguez, Eugene H. Blackstone, Gosta B. Pettersson, Deborah E. Seifert, Belinda B. Willard, Suneel S. Apte

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Figure 5

Fibrinogen and fibronectin have the most numerous internal cleavages in vegetations.

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Fibrinogen and fibronectin have the most numerous internal cleavages in ...
(A) Pie chart of 100 proteins with the most internal N-termini (top 15 are named) shows that fibrinogen (FGA, FGB, FGG) and fibronectin (FN1) have the most numerous internal cleavages in vegetations. (B) The top 15 most cleaved proteins (from left to right) and their average abundance was compared with overall average protein abundance (dotted red line). (C) Number of internal N-termini identified in the top 15 most abundant proteins from the shotgun analysis. (D) Pearson correlation plot shows a modest positive correlation (significantly non-0 P < 0.0001) between protein abundance and number of internal N-termini. The top 15 most abundant proteins are labeled with their gene symbols.

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