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Cellular heterogeneity during mouse pancreatic ductal adenocarcinoma progression at single-cell resolution
Abdel Nasser Hosein, … , Udit Verma, Rolf A. Brekken
Abdel Nasser Hosein, … , Udit Verma, Rolf A. Brekken
Published July 23, 2019
Citation Information: JCI Insight. 2019;4(16):e129212. https://doi.org/10.1172/jci.insight.129212.
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Research Article Gastroenterology Oncology

Cellular heterogeneity during mouse pancreatic ductal adenocarcinoma progression at single-cell resolution

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Abstract

Pancreatic ductal adenocarcinoma (PDA) is a major cause of cancer-related death, with limited therapeutic options available. This highlights the need for improved understanding of the biology of PDA progression, a highly complex and dynamic process, featuring changes in cancer cells and stromal cells. A comprehensive characterization of PDA cancer cell and stromal cell heterogeneity during disease progression is lacking. In this study, we aimed to profile cell populations and understand their phenotypic changes during PDA progression. To that end, we used single-cell RNA–sequencing technology to agnostically profile cell heterogeneity during different stages of PDA progression in genetically engineered mouse models. Our data indicate that an epithelial-mesenchymal transition of cancer cells accompanies tumor progression in addition to distinct populations of macrophages with increasing inflammatory features. We also noted the existence of 3 distinct molecular subtypes of fibroblasts in the normal mouse pancreas, which ultimately gave rise to 2 distinct populations of fibroblasts in advanced PDA, supporting recent reports on intratumor fibroblast heterogeneity. Our data also suggest that cancer cells and fibroblasts may be dynamically regulated by epigenetic mechanisms. This study systematically describes the landscape of cellular heterogeneity during the progression of PDA and has the potential to act as a resource in the development of therapeutic strategies against specific cell populations of the disease.

Authors

Abdel Nasser Hosein, Huocong Huang, Zhaoning Wang, Kamalpreet Parmar, Wenting Du, Jonathan Huang, Anirban Maitra, Eric Olson, Udit Verma, Rolf A. Brekken

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Figure 5

Analysis of fibroblasts during PDA progression reveals multiple molecular subtypes.

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Analysis of fibroblasts during PDA progression reveals multiple molecula...
(A) All fibroblasts from the normal pancreas and early and late KIC lesions were projected onto a single tSNE plot with the FB1, FB2, and FB3 populations distinguished by pink, orange, and brown, respectively (top left). Normal pancreas fibroblasts were highlighted in red (top right), early KIC fibroblasts in green (bottom left) and late KIC fibroblasts in blue (bottom right). Normal pancreas and early KIC contained fibroblasts in all 3 groups whereas the late KIC only contained FB1 and FB3. (B) Heatmap displaying the top significant genes (cutoff: P < 10–40) for each of the 3 fibroblast populations. Thirty random cells from each fibroblast population are displayed. All 3 late-cancer GEMMs (late KIC, KPfC, and KPC) display only FB1 and FB3 populations. (C) Violin plots demonstrating representative marker genes for each fibroblast subtype: FB1 overexpressed cytokines and Pdgfra. FB3 overexpressed mesothelial markers, myofibroblast markers, MHC-II molecules, and Cdh11.

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