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Chromatin remodeler HELLS maintains glioma stem cells through E2F3 and MYC
Guoxin Zhang, Zhen Dong, Briana C. Prager, Leo J.K. Kim, Qiulian Wu, Ryan C. Gimple, Xiuxing Wang, Shideng Bao, Petra Hamerlik, Jeremy N. Rich
Guoxin Zhang, Zhen Dong, Briana C. Prager, Leo J.K. Kim, Qiulian Wu, Ryan C. Gimple, Xiuxing Wang, Shideng Bao, Petra Hamerlik, Jeremy N. Rich
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Research Article Oncology Stem cells

Chromatin remodeler HELLS maintains glioma stem cells through E2F3 and MYC

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Abstract

Glioblastomas, which contain stem cell–like glioblastoma stem cells (GSCs), are universally lethal cancers. While neural stem cells (NSCs) are usually quiescent, single-cell studies suggest that proliferating glioblastoma cells reside in the GSC population. Interrogating in silico glioma databases for epigenetic regulators that correlate with cell cycle regulation, we identified the chromatin remodeler HELLS as a potential target in glioblastoma. GSCs preferentially expressed HELLS compared with their differentiated tumor progeny and nonmalignant brain cells. Targeting HELLS disrupted GSC proliferation, survival, and self-renewal with induction of replication stress and DNA damage. Investigating potential molecular mechanisms downstream of HELLS revealed that HELLS interacted with the core oncogenic transcription factors, E2F3 and MYC, to regulate gene expression critical to GSC proliferation and maintenance. Supporting the interaction, HELLS expression strongly correlated with targets of E2F3 and MYC transcriptional activity in glioblastoma patients. The potential clinical significance of HELLS was reinforced by improved survival of tumor-bearing mice upon targeting HELLS and poor prognosis of glioma patients with elevated HELLS expression. Collectively, targeting HELLS may permit the functional disruption of the relatively undruggable MYC and E2F3 transcription factors and serve as a novel therapeutic paradigm for glioblastoma.

Authors

Guoxin Zhang, Zhen Dong, Briana C. Prager, Leo J.K. Kim, Qiulian Wu, Ryan C. Gimple, Xiuxing Wang, Shideng Bao, Petra Hamerlik, Jeremy N. Rich

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Figure 7

HELLS expression correlates with expression of E2F3 and MYC mRNA and downstream targets.

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HELLS expression correlates with expression of E2F3 and MYC mRNA and dow...
(A) GSC 3565 and 3691 were transduced with either shCONT or 1 of 2 nonoverlapping sHELLS; they then underwent expression analysis by RNA-seq. Unbiased clustering is shown. (B) Principal component analysis of RNA-seq data from A in GSC 3565 and 3691 after HELLS knockdown. (C) Heatmap of the differentially expressed genes in GSC 3565 and 3691 after HELLS knockdown in A. (D) GSEA for the differentially expressed genes obtained from GSC models 3565 and 3691 after HELLS knockdown in A. (E–H) Enrichment plots for E2F targets (E), G2/M checkpoint (F), and MYC targets (G and H) derived from RNA-seq data in A.

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