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Functional heterogeneity of human tissue-resident memory T cells based on dye efflux capacities
Brahma V. Kumar, Radomir Kratchmarov, Michelle Miron, Dustin J. Carpenter, Takashi Senda, Harvey Lerner, Amy Friedman, Steven L. Reiner, Donna L. Farber
Brahma V. Kumar, Radomir Kratchmarov, Michelle Miron, Dustin J. Carpenter, Takashi Senda, Harvey Lerner, Amy Friedman, Steven L. Reiner, Donna L. Farber
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Research Article Immunology

Functional heterogeneity of human tissue-resident memory T cells based on dye efflux capacities

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Abstract

Tissue-resident memory T cells (TRMs) accelerate pathogen clearance through rapid and enhanced functional responses in situ. TRMs are prevalent in diverse anatomic sites throughout the human lifespan, yet their phenotypic and functional diversity has not been fully described. Here, we identify subpopulations of human TRMs based on the ability to efflux fluorescent dyes [efflux(+) TRMs] located within mucosal and lymphoid sites with distinct transcriptional profiles, turnover, and functional capacities. Compared with efflux(–) TRMs, efflux(+) TRMs showed transcriptional and phenotypic features of quiescence including reduced turnover, decreased expression of exhaustion markers, and increased proliferative capacity and signaling in response to homeostatic cytokines. Moreover, upon activation, efflux(+) TRMs secreted lower levels of inflammatory cytokines such as IFN-γ and IL-2 and underwent reduced degranulation. Interestingly, analysis of TRM subsets following activation revealed that both efflux(+) and efflux(–) TRMs undergo extensive transcriptional changes following TCR ligation but retain core TRM transcriptional properties including retention markers, suggesting that TRMs carry out effector function in situ. Overall, our results suggest a model for tissue-resident immunity wherein heterogeneous subsets have differential capacities for longevity and effector function.

Authors

Brahma V. Kumar, Radomir Kratchmarov, Michelle Miron, Dustin J. Carpenter, Takashi Senda, Harvey Lerner, Amy Friedman, Steven L. Reiner, Donna L. Farber

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Figure 3

Efflux(+) TRMs have a unique phenotype.

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Efflux(+) TRMs have a unique phenotype.
(A) Left: CD127 expression by ef...
(A) Left: CD127 expression by efflux(+) and efflux(–) TRMs and TRMs from the spleen of 1 representative donor. Right: Compiled frequencies of CD127+ efflux(+) and efflux(–) TRMs and TEM subsets from spleen (n = 5) and bone marrow (BM, n = 7). (B and C) Left: CD27 (B) and CD28 (C) expression by efflux(+) and efflux(–) TRMs and TRMs from the spleen of 1 representative donor. Right: Compiled frequencies of CD27+ (B) and CD28+ (C) efflux(+) and efflux(–) TRMs and TEM subsets from spleen (n = 7). (D) Left: Expression of PD-1 by efflux(+) and efflux(–) TRM and TEM subsets from the spleen of a representative donor. Right: Compiled expression of PD-1 by efflux(+) and efflux(–) TRMs from spleen (n = 8), lung (n = 7), and BM (n = 6). (E) Left: Histograms of CD57 expression by efflux(+) and efflux(–) TRMs and TEM subsets from the spleen of 1 representative donor. Right: Compiled frequencies of CD57+ TRMs and TEMs from spleen (n = 7) and BM (n = 3). (F) Left: Plots show CD39 expression by efflux(+) and efflux(–) TRM and TEM subsets from the spleen of 1 representative donor. Right: Compiled frequencies of CD39+ TRMs and TEMs from spleen (n = 6). For all panels, *P ≤ 0.05, **P ≤ 0.01, ***P ≤ 0.001, ****P ≤ 0.0001 by paired t test. ns and n.s., not significant.

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