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Lipidomics unveils lipid dyshomeostasis and low circulating plasmalogens as biomarkers in a monogenic mitochondrial disorder
Matthieu Ruiz, Alexanne Cuillerier, Caroline Daneault, Sonia Deschênes, Isabelle Robillard Frayne, Bertrand Bouchard, Anik Forest, Julie Thompson Legault, The LSFC Consortium, Frederic M. Vaz, John D. Rioux, Yan Burelle, Christine Des Rosiers
Matthieu Ruiz, Alexanne Cuillerier, Caroline Daneault, Sonia Deschênes, Isabelle Robillard Frayne, Bertrand Bouchard, Anik Forest, Julie Thompson Legault, The LSFC Consortium, Frederic M. Vaz, John D. Rioux, Yan Burelle, Christine Des Rosiers
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Research Article Cell biology Metabolism

Lipidomics unveils lipid dyshomeostasis and low circulating plasmalogens as biomarkers in a monogenic mitochondrial disorder

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Abstract

Mitochondrial dysfunction characterizes many rare and common age-associated diseases. The biochemical consequences, underlying clinical manifestations, and potential therapeutic targets, remain to be better understood. We tested the hypothesis that lipid dyshomeostasis in mitochondrial disorders goes beyond mitochondrial fatty acid β-oxidation, particularly in liver. This was achieved using comprehensive untargeted and targeted lipidomics in a case-control cohort of patients with Leigh syndrome French-Canadian variant (LSFC), a mitochondrial disease caused by mutations in LRPPRC, and in mice harboring liver-specific inactivation of Lrpprc (H-Lrpprc–/–). We discovered a plasma lipid signature discriminating LSFC patients from controls encompassing lower levels of plasmalogens and conjugated bile acids, which suggest perturbations in peroxisomal lipid metabolism. This premise was reinforced in H-Lrpprc–/– mice, which compared with littermates recapitulated a similar, albeit stronger peroxisomal metabolic signature in plasma and liver including elevated levels of very-long-chain acylcarnitines. These mice also presented higher transcript levels for hepatic markers of peroxisome proliferation in addition to lipid remodeling reminiscent of nonalcoholic fatty liver diseases. Our study underscores the value of lipidomics to unveil unexpected mechanisms underlying lipid dyshomeostasis ensuing from mitochondrial dysfunction herein implying peroxisomes and liver, which likely contribute to the pathophysiology of LSFC, but also other rare and common mitochondrial diseases.

Authors

Matthieu Ruiz, Alexanne Cuillerier, Caroline Daneault, Sonia Deschênes, Isabelle Robillard Frayne, Bertrand Bouchard, Anik Forest, Julie Thompson Legault, The LSFC Consortium, Frederic M. Vaz, John D. Rioux, Yan Burelle, Christine Des Rosiers

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Figure 5

Hepatic levels of plasmalogens, acylcarnitines (ACs), and bile acids (BAs) in H-Lrpprc–/– mice are consistent with peroxisomal lipid metabolism remodeling.

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Hepatic levels of plasmalogens, acylcarnitines (ACs), and bile acids (BA...
LC-MS–based analysis of livers from fed H-Lrpprc–/– mice (n = 13; gray) and their littermate controls (n = 8; white). (A) Box plots of 9 plasmalogens identified through manual alignment of mouse plasma data set with human and mouse reference data sets for which the various plasmalogens had been previously identified by MS/MS. (B) Dot plot of P values obtained using paired Student’s t test analysis for the various AC species: short-chain (SCAC, black), medium-chain (MCAC, red), long-chain (LCAC, orange), hydroxylated short/medium–chain (S/MCAC-OH, green), hydroxylated long-chain (LCAC-OH, pink), odd-numbered carbon chain (dark blue), dicarboxylic (DCAC, light blue), and very-long-chain (VLCAC, purple). Significantly elevated ACs are above the dotted line (P-corr < 0.05 corresponding to a P value of 0.035). See also Supplemental Figure 5 for the most representative increased ACs. (C) Box plots of LC-QQQ–based profiling of VLC-ACs and LPC 26:0. (D) Box plots of LC-QQQ–based analysis of conjugated/unconjugated BAs expressed as ratios. Statistics using 2-tailed unpaired Student’s t test: *P < 0.05; **P < 0.01, ***P < 0.001 before and $P < 0.05, $$P < 0.01, $$$P < 0.001 after Benjamini-Hochberg correction.

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